Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq3048 468 1e-127 seq2823 293 7e-75 seq838 277 5e-70 seq929 273 6e-69 seq2704 107 6e-19 >seq3048 Length=155691 Score = 468 bits (518), Expect = 1e-127 Identities = 684/960 (71%), Gaps = 8/960 (1%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | | | ||| |||| || Sbjct 1390 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGACCGCAAC 1332 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||| || || ||| ||||| || || || || ||||| || || || Sbjct 1331 TTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1272 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || | | || || ||||| || || || || ||| | | || | Sbjct 1271 ACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTAC 1212 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | ||||| |||||||| |||||||| ||| | |||||||||| Sbjct 1211 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATG 1152 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-TTG 41558 | | |||||||| || || | | || | || | |||||| | |||| || ||| Sbjct 1151 GTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 1092 Query 41559 CTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTG 41618 || | ||||| || |||||||||||||| | || || || ||| | || ||||| || Sbjct 1091 CT-ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTG 1033 Query 41619 TTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGAC 41678 |||| || || |||||||| || ||||| |||||||| ||| | | || || |||| | Sbjct 1032 TTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTC 973 Query 41679 AGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGG 41738 | || |||||||| | |||||| | || || || || || ||||||| |||| | | Sbjct 972 AAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTG 913 Query 41739 TGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCG 41798 | ||||| ||||||||||| || |||||||| || ||||||||||| |||||||| || | Sbjct 912 TATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTG 853 Query 41799 TATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTC 41858 ||||||| || | ||| ||||||||| ||| |||| || || | || Sbjct 852 TATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCA 793 Query 41859 GTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGA 41918 | || || || ||| | | || || | ||||||| || |||||||||||||| | Sbjct 792 GGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAA 733 Query 41919 CTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCT 41978 | || ||||| || || ||||| || |||||||| || | ||||||||||||||||| | Sbjct 732 CCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTT 673 Query 41979 TTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGT 42038 | || ||||| ||| | | || ||||| | ||||| |||||||| |||||||| |||| Sbjct 672 TCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGT 613 Query 42039 TTGCTGCGCTTGGCGTGTC--TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCA 42096 | | ||||| || || || |||||||||||||| |||||||| || || || || Sbjct 612 T--CACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAATCA 555 Query 42097 ATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGC 42156 |||| | | | | | | || | || || || || |||||||| ||| | ||||| || Sbjct 554 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATCAACCGCGC 495 Query 42157 CAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 || ||||| | || || |||||||| || || || || || ||||| || ||||| || Sbjct 494 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 435 >seq2823 Length=1025 Score = 293 bits (324), Expect = 7e-75 Identities = 388/534 (73%), Gaps = 6/534 (1%) Strand=Plus/Plus Query 41687 TTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAG 41746 |||||||| | |||||| | || || || || || ||||||| |||| | || ||||| Sbjct 23 TTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAA 82 Query 41747 GCTGAGCACAATATTCTTATGCATCCTTTTC-ACATGCTGGGTGTGGCCGGCGTATTTGG 41805 ||||||||||| || |||||||| || |||| ||||||| |||||||| || |||||||| Sbjct 83 GCTGAGCACAACATCCTTATGCACCCATTTCTACATGCTAGGTGTGGCTGGTGTATTTGG 142 Query 41806 TGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTGAGAC 41865 || | ||| ||||||||| ||| |||| || || | || | || || Sbjct 143 CGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAAC 202 Query 41866 GACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAA 41925 || ||| | | || || | ||||||| || |||||||||||||| || || || Sbjct 203 CACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAA 262 Query 41926 TATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTAATAA 41985 ||| || || ||||| || |||||||| || | ||||||||||||||||| || || || Sbjct 263 TATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 322 Query 41986 TTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGC 42045 ||| ||| | | || ||||| | ||||| |||||||| |||||||| ||||| | | Sbjct 323 TTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT--CACC 380 Query 42046 GCTTGGCGTGTC--TACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTG 42103 |||| || || || |||||||||||||| |||||||| || || || |||||| | Sbjct 381 GCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAATCAATCTGTA 440 Query 42104 CTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTG-CCAACCT 42162 | | | | | || | || || || || |||||||| ||| | ||||| | | || || Sbjct 441 GTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATCAACCGCGACTAATCT 500 Query 42163 TGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||| | || || |||||||| || || || || || ||||| || ||||| || Sbjct 501 TGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 554 >seq838 Length=1002 Score = 277 bits (306), Expect = 5e-70 Identities = 411/576 (71%), Gaps = 5/576 (1%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | | | ||| |||| || Sbjct 591 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGACCGCAAC 533 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAG- 41378 || |||||||| || || ||| ||||| || || || || ||||| || || | Sbjct 532 TTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGT 473 Query 41379 AACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGA 41438 |||| || |||| || | | || || ||||| || || || || ||| | | || | Sbjct 472 AACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTA 413 Query 41439 GCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAAT 41498 | || || || | ||||| |||||||| |||||||| ||| | ||||||||| Sbjct 412 CTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAAT 353 Query 41499 GGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCT-TT 41557 || | |||||||| || || | | || | || | |||||| | |||| || || Sbjct 352 GGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 293 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTT 41617 ||| | ||||| || |||||||||||||| | || || || ||| | || ||||| | Sbjct 292 GCT-ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 234 Query 41618 GTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGA 41677 ||||| || || |||||||| || ||||| |||||||| ||| | | || || |||| Sbjct 233 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 174 Query 41678 CAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTG 41737 || || |||||||| | |||||| | || || || || || ||||||| |||| | Sbjct 173 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATT 114 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 || ||||| ||||||||||| || |||||||| || ||||||||||| |||||||| || Sbjct 113 GTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGT 54 Query 41798 GTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGT 41833 |||||||| || | ||| ||||||||| ||| Sbjct 53 GTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGT 18 >seq929 Length=1222 Score = 273 bits (302), Expect = 6e-69 Identities = 395/551 (72%), Gaps = 5/551 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | | | ||| |||| || Sbjct 664 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGACCGCAAC 722 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGC-GCACCACCTGTTGACATCGATGGAATCCGAG 41378 || |||||||| |||| | || ||||| || || || || ||||| || || | Sbjct 723 TTCTGTATTTATTATTAGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTG 782 Query 41379 AACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGA 41438 |||| || |||| || | | || || ||||| || || || || ||| | | || | Sbjct 783 AACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTA 842 Query 41439 GCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAAT 41498 | || || || | ||||| |||||||| |||||||| ||| | ||||||||| Sbjct 843 CTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAAT 902 Query 41499 GGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT-CTTT 41557 || | |||||||| || || | | || | || | |||||| | |||| || || Sbjct 903 GGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTT 962 Query 41558 GCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTT 41617 || || ||||| || |||||||||||||| | || || || ||| | || ||||| | Sbjct 963 GC-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCT 1021 Query 41618 GTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGA 41677 ||||| || || |||||||| || ||||| |||||||| ||| | | || || |||| Sbjct 1022 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGT 1081 Query 41678 CAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTG 41737 || || |||||||| | |||||| | || || || || || ||||||| |||| | Sbjct 1082 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATT 1141 Query 41738 GTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGC 41797 || ||||| ||||||||||| || |||||||| || ||||||||||| |||||||| || Sbjct 1142 GTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGT 1201 Query 41798 GTATTTGGTGG 41808 |||||||| || Sbjct 1202 GTATTTGGCGG 1212 >seq2704 Length=1012 Score = 107 bits (118), Expect = 6e-19 Identities = 180/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | ||||| || | | | ||| |||| || Sbjct 705 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACTTTATTGACCGCAAC 763 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||| || || ||| ||||| || || || || ||||| || || || Sbjct 764 TTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 823 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || | | || || ||||| || || || || ||| | | || | Sbjct 824 ACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTAC 883 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | ||||| |||||||| |||||||| ||| | |||||||||| Sbjct 884 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATG 943 Query 41500 GCTGTACAACGGCGGTCC 41517 | | |||||||| || || Sbjct 944 GTTATACAACGGTGGCCC 961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146209107769792