Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq3048 553 4e-153 seq2823 352 8e-93 seq838 325 1e-84 seq929 307 3e-79 seq2704 163 8e-36 >seq3048 Length=155691 Score = 553 bits (612), Expect = 4e-153 Identities = 730/1007 (72%), Gaps = 4/1007 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||||| ||| | || || | ||||||||||| |||| |||||| Sbjct 1426 TGGGGTCGCTTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 1367 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| | |||||||| Sbjct 1366 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCAT 1308 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||||||||| |||||||| |||||||||||||| ||||| ||| | || || Sbjct 1307 TGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTA 1248 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || || || | || || Sbjct 1247 CGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTT 1188 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | |||| |||||| | ||||| || || |||||| | Sbjct 1187 TTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGA 1128 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | || |||| || || |||||||| Sbjct 1127 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAACT 1068 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 1067 TAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 1008 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | |||| ||| |||| ||||| ||||| || || ||||| Sbjct 1007 TGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCC 948 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||||||| | || ||||| ||||| || ||||| || Sbjct 947 TCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCT 888 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||||| ||||| || || |||||||| || || | ||| || Sbjct 887 TATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGC 828 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 827 TATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 768 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| |||||||||||||| || || ||||| || || || || ||||| Sbjct 767 TAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGG 708 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| |||| Sbjct 707 TTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACACT 649 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || || |||||||| || | || |||| |||| Sbjct 648 TCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTA 589 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||||| ||||||||||| || || ||||| | ||||||| ||| || || Sbjct 588 TGGCTTTCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTG 529 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || |||||||||||||||| | || || || || ||||| | || || ||||| | Sbjct 528 TAATTAATACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTTATGCATG 469 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 | || ||||| ||||| ||||| || || || || | || || ||| Sbjct 468 AACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTTGAAGTT 422 >seq2823 Length=1025 Score = 352 bits (390), Expect = 8e-93 Identities = 422/568 (74%), Gaps = 4/568 (1%) Strand=Plus/Plus Query 42720 CTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTT 42779 ||| ||| |||| ||||| ||||| || || |||||||| || || || ||||| || Sbjct 1 CTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTT 60 Query 42780 CAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCC-TTTCCATATGC 42838 |||||||||| | || ||||| ||||| || ||||| |||||||| || |||| | |||| Sbjct 61 CAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGC 120 Query 42839 TTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCA 42898 | ||||| || || |||||||| || || | ||| |||||||||||| | | || | Sbjct 121 TAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAA 180 Query 42899 CCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCG 42958 ||||| | | | | ||||| || ||||| ||| ||| | || |||| |||| Sbjct 181 CCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCG 240 Query 42959 GTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCT 43018 |||||||||| || || ||||| || || || || |||||||| ||||| || | |||| Sbjct 241 GTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCT 300 Query 43019 TCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCC 43077 |||||||||| | |||| || ||| ||| ||||| |||||||| | || |||||||| Sbjct 301 TCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCT 359 Query 43078 GTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGT 43137 || || || || |||||||| || | || |||| |||||||| || ||||| |||||| Sbjct 360 GTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGT 419 Query 43138 TTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGAT 43197 ||||| || || ||||| | ||||||| ||| || ||| || ||||||||||||| Sbjct 420 TTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGAT 479 Query 43198 ATTTTGAATCGTG-CCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTT 43256 ||| | || || | | || ||||| | || || ||||| || || ||||| ||||| || Sbjct 480 ATTATCAACCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTT 539 Query 43257 CCCGCTTGATCTTGCATCCGTGGAGGTT 43284 ||| || || || || | || || ||| Sbjct 540 CCCTCTAGACCTAGCTGCTGTTGAAGTT 567 >seq838 Length=1002 Score = 325 bits (360), Expect = 1e-84 Identities = 450/626 (72%), Gaps = 3/626 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||||| ||| | || || | ||||||||||| |||| |||||| Sbjct 627 TGGGGTCGCTTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 568 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| | |||||||| Sbjct 567 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCAT 509 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTG-AACCTGTCTCTGGCTCTCTTCTGT 42457 |||||| ||||||||||| |||||||| ||||||| ||||||| ||||| ||| | || | Sbjct 508 TGCTGCACCTCCGGTAGATATTGATGGTATTCGTGTAACCTGTTTCTGGATCTTTACTTT 449 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || || || |||||| | | |||| | || || || | || | Sbjct 448 ACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACT 389 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | | |||| |||||| | ||||| || || |||||| Sbjct 388 TTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATG 329 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | || |||| || || ||||||| Sbjct 328 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAAC 269 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 268 TTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 209 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || ||||| || ||| | |||| ||| |||| ||||| ||||| || || |||| Sbjct 208 CTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGC 149 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || || || ||||| |||||||||||| | || ||||| ||||| || ||||| | Sbjct 148 CTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCC 89 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 ||||||| || || || ||||| ||||| || || |||||||| || || | ||| | Sbjct 88 TTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTG 29 Query 42878 CTATGCATGGTAGTCTTGTCACCTCT 42903 ||||||||||| | | || |||||| Sbjct 28 CTATGCATGGTTCTTTGGTAACCTCT 3 >seq929 Length=1222 Score = 307 bits (340), Expect = 3e-79 Identities = 424/589 (72%), Gaps = 3/589 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||||| ||| | || || | ||||||||||| |||| |||||| Sbjct 628 TGGGGTCGCTTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 687 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTC-GCTTTCA 42397 ||||| ||||||| || | | | | || || | ||| |||||| | ||||||| Sbjct 688 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTAGCTTTCA 746 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||| | || | Sbjct 747 TTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTT 806 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || || || |||||| | | |||| | || || || | || | Sbjct 807 ACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACT 866 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | | |||| |||||| | ||||| || || |||||| Sbjct 867 TTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATG 926 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | || |||| || || ||||||| Sbjct 927 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATATGGGTCGTGAGTGGGAAC 986 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 987 TTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 1046 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || ||||| || ||| | |||| ||| |||| ||||| ||||| || || |||| Sbjct 1047 CTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGC 1106 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 |||| || || || ||||| |||||||||||| | || ||||| ||||| || ||||| | Sbjct 1107 CTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCC 1166 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTC 42866 ||||||| || || || ||||| ||||| || || |||||||| || || Sbjct 1167 TTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTC 1215 >seq2704 Length=1012 Score = 163 bits (180), Expect = 8e-36 Identities = 229/319 (72%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || |||||||| ||| | || || | ||||||||||| |||| |||||| Sbjct 669 TGGGGTCGCTTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 728 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| | |||||||| Sbjct 729 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATTGCTTTCAT 787 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||||||||| |||||||| |||||||||||||| ||||| ||| | || || Sbjct 788 TGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTA 847 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || || || | || || Sbjct 848 CGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGTTTGCACTT 907 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | |||| |||||| | ||||| || || |||||| | Sbjct 908 TTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGA 967 Query 42579 GCTCGTCGTGTTCCACTTC 42597 ||| | || | |||||| Sbjct 968 GCTAATTGTTCTACACTTC 986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143527604830304