Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq3048 471 1e-128 seq838 295 2e-75 seq2823 284 4e-72 seq929 279 2e-70 seq2704 161 3e-35 >seq3048 Length=155691 Score = 471 bits (522), Expect = 1e-128 Identities = 702/987 (71%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||||||| | || || ||| Sbjct 435 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 494 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 495 GCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 554 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 || || || ||||||||||||| ||| || ||||| |||| |||||| | || || | | Sbjct 555 TGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTGAAC 614 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | ||||| || | |||||| || || ||| Sbjct 615 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTGTTGAAA 674 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 675 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAGGTT 734 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 735 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 794 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || |||||| || ||||||||| ||| || | || || || || Sbjct 795 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACA 854 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||||||||| || || || || || ||||||||||| Sbjct 855 CCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACA 914 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| |||||||||||||| || |||||||| || ||| ||| || ||||| Sbjct 915 ATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGA 974 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | || || | ||||| || || ||| || | | || |||| |||||||||| Sbjct 975 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1034 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC 26535 ||||| || | ||| || || | | || |||||||||| | || ||||| || Sbjct 1035 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC--CATATAGC 1092 Query 26536 -TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCC 26594 ||||| || | ||||||||| | | ||| || | ||| || || || ||||||| || Sbjct 1093 AAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACC 1152 Query 26595 ACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGG 26654 | || || | | | |||||||| || |||||||| || | || || || ||| | Sbjct 1153 ATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAG 1212 Query 26655 AGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT 26714 |||| | || || || || |||||||||||||| | ||| || || ||||| || | Sbjct 1213 TAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTT 1272 Query 26715 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTA 26773 |||| || ||||| |||||||| || ||||| || ||||| |||| ||||| ||| | | Sbjct 1273 CACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA-GAA 1331 Query 26774 GTGGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 || || | | | ||| |||| ||||| | || || |||||||| | || |||||||| Sbjct 1332 GTTGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1390 Query 26833 CTCAGTACTTGTAACCCACTCACAAAA 26859 || || || || | ||| | |||||| Sbjct 1391 TTCGGTGCTGGTTATCCAATTACAAAA 1417 >seq838 Length=1002 Score = 295 bits (326), Expect = 2e-75 Identities = 443/619 (72%), Gaps = 9/619 (1%) Strand=Plus/Plus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 || || |||||| || ||||||||| ||| || | || || || || ||||| ||| Sbjct 4 GAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACA 63 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||||||||| || || || || || ||||||||||| | ||| ||| Sbjct 64 CCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAG 123 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGA 26425 || |||||||||||||| || |||||||| || ||| ||| || ||||| || | || Sbjct 124 TTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGG 183 Query 26426 TAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCAT 26485 || | ||||| || || ||| || | | || |||| |||||||||| ||||| Sbjct 184 TAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 243 Query 26486 GGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATAT-GC-TGCTACTC 26543 || | ||| || || | | || |||||||||| | || ||||| || ||||| | Sbjct 244 GGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC--CATATAGCAAGCTACAC 301 Query 26544 CTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCA 26603 | | ||||||||| | | ||| || | ||| || || || ||||||| ||| || || | Sbjct 302 CAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAA 361 Query 26604 GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGA 26663 | | |||||||| || |||||||| || | || || || ||| | |||| | Sbjct 362 CAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAA 421 Query 26664 CTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT-CACGTATG 26722 || || || || |||||||||||||| | ||| || || ||||| || | |||| || Sbjct 422 TGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAATA 481 Query 26723 CCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTG- 26780 ||||| |||||||| || ||||| || ||||| |||| ||||| ||| | ||| || | Sbjct 482 CCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGTTGCGGT 540 Query 26781 CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTAC 26840 | | ||| |||| ||||| | || || |||||||| | || |||||||| || || | Sbjct 541 CAATAAAGTAGGG-ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGC 599 Query 26841 TTGTAACCCACTCACAAAA 26859 | || | ||| | |||||| Sbjct 600 TGGTTATCCAATTACAAAA 618 >seq2823 Length=1025 Score = 284 bits (314), Expect = 4e-72 Identities = 391/544 (72%), Gaps = 2/544 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||||||| | || || ||| Sbjct 554 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 495 Query 25937 G-CTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGA 25995 | | ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 494 GTCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGA 435 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 || || || ||||||||||||| ||| || ||||| |||| |||||| | || || | Sbjct 434 TTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTGAA 375 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| || || || Sbjct 374 CCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAATTGTTGAA 315 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 314 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAGGT 255 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 254 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 195 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || |||||| || ||||||||| ||| || | || || || || Sbjct 194 GATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATAC 135 Query 26296 CCCAGCAACACCAGCCATAT-GGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATA 26354 ||||| ||||| ||| | | ||||||||||| || || || || || |||||||||| Sbjct 134 ACCAGCCACACCTAGCATGTAGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATA 75 Query 26355 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTT 26414 | | ||| ||||| |||||||||||||| || |||||||| || ||| ||| || |||| Sbjct 74 CAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTT 15 Query 26415 GTCC 26418 | || Sbjct 14 GACC 11 >seq929 Length=1222 Score = 279 bits (308), Expect = 2e-70 Identities = 416/580 (72%), Gaps = 9/580 (2%) Strand=Plus/Minus Query 26285 CCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCT 26344 || || || || ||||| ||||| ||| || ||||||||||| || || || || || Sbjct 1212 CCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 1153 Query 26345 GCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTA 26404 ||||||||||| | ||| ||||| |||||||||||||| || |||||||| || ||| | Sbjct 1152 GCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 1093 Query 26405 AAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCT 26464 || || ||||| || | || || | ||||| || || ||| || | | || ||| Sbjct 1092 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 1033 Query 26465 GTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTC 26524 | |||||||||| ||||| || | ||| || || | | || |||||||||| | Sbjct 1032 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 973 Query 26525 CCTGCATAT-GCT-GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGC 26582 || ||||| || ||||| || | ||||||||| | | ||| || | ||| || || | Sbjct 972 CC--CATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCAC 915 Query 26583 CATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGA 26642 | ||||||| ||| || || | | | |||||||| || |||||||| || | || | Sbjct 914 CGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTA 855 Query 26643 TTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGC 26702 | || ||| | |||| | || || || || |||||||||||||| | ||| || | Sbjct 854 TAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATC 795 Query 26703 CGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGC-AAGT 26761 | ||||| || ||||| || ||||| |||||||| || ||||| || ||||| || || Sbjct 794 CAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCTAATA 735 Query 26762 ATAAA-ACATGTAGTGGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCA 26819 ||||| ||| | ||| || | | | ||| |||| ||||| | || || |||||||| | Sbjct 734 ATAAATACA-GAAGTTGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCATCCAA 677 Query 26820 CATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 || |||||||| || || || || | ||| | |||||| Sbjct 676 TGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 637 >seq2704 Length=1012 Score = 161 bits (178), Expect = 3e-35 Identities = 234/325 (72%), Gaps = 4/325 (1%) Strand=Plus/Minus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || || || ||||||| ||| Sbjct 1000 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCAT 941 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | | |||||||| || |||||||| || | || || || ||| | Sbjct 940 TCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 881 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 |||| | || || || || |||||||||||||| | ||| || || ||||| || ||| Sbjct 880 GGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCA 821 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 || || ||||| |||||||| || ||||| || ||||| |||| ||||| ||| | ||| Sbjct 820 CGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGT 762 Query 26776 GGCTG-CGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 || | | | ||| |||| ||||| | || || |||||||| | || |||||||| | Sbjct 761 TGCGGTCAATAAAGTAGGG-ATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 703 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 | || || || | ||| | |||||| Sbjct 702 CGGTGCTGGTTATCCAATTACAAAA 678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147706653564160