Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq3048 551 6e-152 seq2823 343 2e-89 seq838 336 3e-87 seq929 309 4e-79 seq2704 161 1e-34 seq672 102 1e-16 >seq3048 Length=155691 Score = 551 bits (610), Expect = 6e-152 Identities = 708/974 (73%), Gaps = 12/974 (1%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | || Sbjct 1393 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCA 1334 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| | || ||||||||||||||||| ||||| ||||||||||||||| Sbjct 1333 ACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGT 1274 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| |||||| | || || ||||| || || || ||||| || ||||| Sbjct 1273 GAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCT 1214 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | ||||| || || || |||||||| || || ||||||| Sbjct 1213 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAA 1154 Query 155233 TGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACA 155292 ||||| ||||| ||||| |||| | || | || | |||||| | | || | | Sbjct 1153 TGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---A 1097 Query 155293 GCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATC 155349 || | || | |||||| ||||||||||| || |||||| || ||||| |||||||| Sbjct 1096 GCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATT 1037 Query 155350 TGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTC 155409 ||||||||| || || || || | ||||| ||||| ||| | | || || | Sbjct 1036 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATT 977 Query 155410 GGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 155469 |||||||| || ||||| | |||||||| || |||||||||||||| |||| ||| Sbjct 976 GGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 917 Query 155470 TTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCA 155529 | || |||||||| || ||||| |||||||||||||| || |||||||| || || || Sbjct 916 ATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCT 857 Query 155530 GGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTA 155589 ||||| || || || || || ||| ||||||||| ||||| ||||| || ||| | Sbjct 856 GGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 797 Query 155590 ATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAA 155649 ||| | ||||| || || | || ||| || | ||||||| ||||| ||||| ||| Sbjct 796 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 737 Query 155650 GAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCA 155709 ||||| ||||| || || || |||||||| || || || || | |||||||| ||||| Sbjct 736 GAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 677 Query 155710 TCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATC 155769 |||||||| || | | | ||||||||| | ||||| |||||||| || | ||| Sbjct 676 AGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATC 617 Query 155770 TGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAAC 155829 ||| || ||| | ||| | || ||||| |||||| | || ||||| || ||||| Sbjct 616 TGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAAT 557 Query 155830 CAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAAC 155886 || |||||||| || |||| ||| || || ||| ||||| || ||| | ||| Sbjct 556 CAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATCAAC 500 Query 155887 CGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946 |||||| ||||||||||||||| ||||| || ||||| ||||| || |||||||| ||| Sbjct 499 CGCGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGAC 440 Query 155947 CTTGCTGCTGCTGA 155960 || ||||||| ||| Sbjct 439 CTAGCTGCTGTTGA 426 >seq2823 Length=1025 Score = 343 bits (380), Expect = 2e-89 Identities = 412/556 (74%), Gaps = 8/556 (1%) Strand=Plus/Plus Query 155410 GGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATG 155469 |||||||| || ||||| | |||||||| || |||||||||||||| |||| ||| Sbjct 11 GGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATG 70 Query 155470 TTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCC-CTTCCACATGCTTGGAGTAGC 155528 | || |||||||| || ||||| |||||||||||||| ||| ||||||| || || || Sbjct 71 ATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGCTAGGTGTGGC 130 Query 155529 AGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACT 155588 ||||| || || || || || ||| ||||||||| ||||| ||||| || ||| | Sbjct 131 TGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTT 190 Query 155589 AATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGA 155648 ||| | ||||| || || | || ||| || | ||||||| ||||| ||||| || Sbjct 191 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGA 250 Query 155649 AGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGC 155708 |||||| ||||| || || || |||||||| || || || || | |||||||| ||||| Sbjct 251 AGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 310 Query 155709 ATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCAT 155768 |||||||| || | | | ||||||||| | ||||| |||||||| || | || Sbjct 311 TAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTAT 370 Query 155769 CTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAA 155828 |||| || ||| | ||| | || ||||| |||||| | || ||||| || ||||| Sbjct 371 CTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAATTTCAA 430 Query 155829 CCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAA 155885 || |||||||| || |||| ||| || || ||| ||||| || ||| | || Sbjct 431 TCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATCAA 487 Query 155886 CCGCG-CTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTG 155944 ||||| || ||||||||||||||| ||||| || ||||| ||||| || |||||||| | Sbjct 488 CCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAG 547 Query 155945 ACCTTGCTGCTGCTGA 155960 |||| ||||||| ||| Sbjct 548 ACCTAGCTGCTGTTGA 563 >seq838 Length=1002 Score = 336 bits (372), Expect = 3e-87 Identities = 433/595 (73%), Gaps = 7/595 (1%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | || Sbjct 594 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCA 535 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| | || ||||||||||||||||| ||||| ||||||||||||||| Sbjct 534 ACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGT 475 Query 155113 G-AACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC 155171 | |||| || |||| |||||| | || || ||||| || || || ||||| || |||| Sbjct 474 GTAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCC 415 Query 155172 TAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGA 155231 || ||| || || ||| | ||||| || || || |||||||| || || ||||||| Sbjct 414 TACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGA 355 Query 155232 GTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 155291 ||||| ||||| ||||| |||| | || | || | |||||| | | || | Sbjct 354 ATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT--- 298 Query 155292 AGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGAT 155348 ||| | || | |||||| ||||||||||| || |||||| || ||||| |||||||| Sbjct 297 AGCTTGCTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT 238 Query 155349 CTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTT 155408 ||||||||| || || || || | ||||| ||||| ||| | | || || | Sbjct 237 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAAT 178 Query 155409 CGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATAT 155468 |||||||| || ||||| | |||||||| || |||||||||||||| |||| || Sbjct 177 TGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCAT 118 Query 155469 GTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGC 155528 | | || |||||||| || ||||| |||||||||||||| || |||||||| || || || Sbjct 117 GATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGC 58 Query 155529 AGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583 ||||| || || || || || ||| ||||||||| ||||| ||||| || ||| Sbjct 57 TGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCT 3 >seq929 Length=1222 Score = 309 bits (342), Expect = 4e-79 Identities = 361/486 (74%), Gaps = 6/486 (1%) Strand=Plus/Plus Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || ||||||||||||||||| ||||| |||||||||||||||||||| || |||| ||| Sbjct 740 GCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 799 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 ||| | || || ||||| || || || ||||| || |||||| ||| || || ||| Sbjct 800 TTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCAGCTATAGGT 859 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGT 155250 | ||||| || || || |||||||| || || ||||||| ||||| ||||| ||||| Sbjct 860 TTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGC 919 Query 155251 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 155307 |||| | || | || | |||||| | | || | ||| | || | |||||| Sbjct 920 CCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGCTATATGGGTCGT 976 Query 155308 CAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 155367 ||||||||||| || |||||| || ||||| |||||||| ||||||||| || || Sbjct 977 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCT 1036 Query 155368 CCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCT 155427 || || | ||||| ||||| ||| | | || || | |||||||| || ||| Sbjct 1037 CCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCT 1096 Query 155428 GATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAA 155487 || | |||||||| || |||||||||||||| |||| ||| | || |||||||| || Sbjct 1097 GACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAG 1156 Query 155488 CACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCT 155547 ||||| |||||||||||||| || |||||||| || || || ||||| || || || || Sbjct 1157 CACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCC 1216 Query 155548 CTTTTC 155553 || ||| Sbjct 1217 CTATTC 1222 >seq2704 Length=1012 Score = 161 bits (178), Expect = 1e-34 Identities = 193/262 (74%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | || Sbjct 702 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCA 761 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| | || ||||||||||||||||| ||||| ||||||||||||||| Sbjct 762 ACTTCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGT 821 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| |||||| | || || ||||| || || || ||||| || ||||| Sbjct 822 GAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCT 881 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | ||||| || || || |||||||| || || ||||||| Sbjct 882 ACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAA 941 Query 155233 TGGTTGTACAATGGTGGTCCTT 155254 ||||| ||||| ||||| |||| Sbjct 942 TGGTTATACAACGGTGGCCCTT 963 >seq672 Length=1075 Score = 102 bits (112), Expect = 1e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 155865 TACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAA 155924 ||| ||||| || ||| | ||||||||| ||||||||||||||| ||||| || ||||| Sbjct 1053 TACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 994 Query 155925 CGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 ||||| || |||||||| ||||| ||||||| ||| Sbjct 993 TGCTCATAATTTCCCTCTAGACCTAGCTGCTGTTGA 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584812917778880