Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq3048 499 9e-137 seq838 318 2e-82 seq929 315 2e-81 seq2823 297 5e-76 seq2704 172 2e-38 seq672 84.2 6e-12 >seq3048 Length=155691 Score = 499 bits (552), Expect = 9e-137 Identities = 715/998 (72%), Gaps = 12/998 (1%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| ||||||||| || || ||||| ||||| || ||||| ||||||||| Sbjct 426 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 485 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || ||| | | ||| | || ||||||||||||| ||| || ||| | | || Sbjct 486 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATCA 545 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 ||||| || || || || ||||||||||| | ||| ||||||||||| ||||| | Sbjct 546 ACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAA 605 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | ||| | ||| || || | || || ||||| | | |||||||||| | ||| | Sbjct 606 GCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAA 665 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||||||||| || || | || ||||| ||||| || || |||||||| Sbjct 666 TTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATA 725 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 ||||| || || | || ||||| || | || || | || |||||| |||| ||| Sbjct 726 TTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTG 785 Query 40884 GTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCA 40940 || |||| || | | |||| || ||| | || ||||||||| || | | | Sbjct 786 GTTTCCCTGATCAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACTGAATAGGGAA 842 Query 40941 CCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCT 41000 || ||||| || || || || || ||||| || ||||||||||| || |||||||| || Sbjct 843 CCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 902 Query 41001 GCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAG 41060 |||||||| |||| |||||||||||| || ||| |||||||| ||||||||| ||||| Sbjct 903 GCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 962 Query 41061 AAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCT 41120 || || ||||| | ||| || | ||||| ||||| ||| |||| | |||||| Sbjct 963 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 1022 Query 41121 GTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTA 41180 | ||||| ||| ||||| || | |||||| || | | | ||||||||||| | | Sbjct 1023 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 1082 Query 41181 CCAGCGTAT-GC-TGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGC 41238 || | ||| || ||||| || | ||| ||||| | ||||| || | ||| || || | Sbjct 1083 CC--CATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCAC 1140 Query 41239 CGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGA 41298 ||||||||| ||| || || | | | |||||||| |||||||| || || | || | Sbjct 1141 CGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTA 1200 Query 41299 TTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGC 41358 | || ||| | || | | || || || ||||||||||| ||||| | ||| || | Sbjct 1201 TAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATC 1260 Query 41359 CGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTA 41418 | ||||| || ||||| || ||||| |||||||| || ||||| || || || || || | Sbjct 1261 CAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAA 1320 Query 41419 TGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACG 41477 | || ||| | || || || | ||| | || ||||| | ||||||||||| || | | Sbjct 1321 TAAATACA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATG 1379 Query 41478 TATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 || || ||||| |||||||| || | ||| |||||||| Sbjct 1380 TAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 1417 >seq838 Length=1002 Score = 318 bits (352), Expect = 2e-82 Identities = 437/603 (72%), Gaps = 7/603 (1%) Strand=Plus/Plus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| || | | ||| ||||| || || || || || ||||| || ||| Sbjct 19 CCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAAT 78 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 |||||||| || |||||||| || |||||||| |||| |||||||||||| || ||| | Sbjct 79 GGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAG 138 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||| ||||||||| ||||| || || ||||| | ||| || | ||||| ||| Sbjct 139 ATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACA 198 Query 41097 GCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGT 41156 || ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || Sbjct 199 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 258 Query 41157 CTGTATGAAAGTTCCCACTGTCTACCAGCGTAT-GC-TGCTACTCCTATTAAAAAGTGAA 41214 | | | ||||||||||| | ||| | ||| || ||||| || | ||| ||||| | Sbjct 259 CGGAAACTAAGTTCCCACTCACGACC--CATATAGCAAGCTACACCAAGTAAGAAGTGTA 316 Query 41215 AGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCC 41274 ||||| || | ||| || || |||||||||| ||| || || | | | ||||||| Sbjct 317 GAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCC 376 Query 41275 AGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAA 41334 | |||||||| || || | || || || ||| | || | | || || || |||| Sbjct 377 ATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAA 436 Query 41335 TATTGTTCCCGTACATTAACGAGCCGGAAACGGGCT-CACGTATGCCATCTATATCTACA 41393 ||||||| ||||| | ||| || || ||||| || | |||| || ||||| |||||||| Sbjct 437 TATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAATACCATCAATATCTACC 496 Query 41394 GGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAAT 41452 || ||||| || || || || || || || ||| | || || || | ||| | || || Sbjct 497 GGAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGTTGCGGTCAATAAAGTAGGGAT 555 Query 41453 CATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACA 41512 ||| | ||||||||||| || | ||| || ||||| |||||||| || | ||| ||||| Sbjct 556 CATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACA 615 Query 41513 AAA 41515 ||| Sbjct 616 AAA 618 >seq929 Length=1222 Score = 315 bits (348), Expect = 2e-81 Identities = 420/579 (73%), Gaps = 5/579 (1%) Strand=Plus/Minus Query 40940 ACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTC 40999 ||| ||||| || || || || || ||||| || ||||||||||| || |||||||| || Sbjct 1213 ACCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTC 1154 Query 41000 TGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGA 41059 |||||||| |||| |||||||||||| || ||| |||||||| ||||||||| ||||| Sbjct 1153 AGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGA 1094 Query 41060 GAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGC 41119 || || ||||| | ||| || | ||||| ||||| ||| |||| | ||||| Sbjct 1093 AAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGC 1034 Query 41120 TGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCT 41179 || ||||| ||| ||||| || | |||||| || | | | ||||||||||| | Sbjct 1033 TGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACG 974 Query 41180 ACCAGCGTAT-GCT-GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCG 41237 ||| | ||| || ||||| || | ||| ||||| | ||||| || | ||| || || Sbjct 973 ACC--CATATAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCA 916 Query 41238 CCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCG 41297 |||||||||| ||| || || | | | |||||||| |||||||| || || | || Sbjct 915 CCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCT 856 Query 41298 ATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAG 41357 || || ||| | || | | || || || ||||||||||| ||||| | ||| || Sbjct 855 ATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGAT 796 Query 41358 CCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATT 41417 || ||||| || ||||| || ||||| |||||||| || ||||| || || || || | | Sbjct 795 CCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCTAAT 736 Query 41418 ATGAAACA-TGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTAC 41476 | ||| | | || || || | ||| | || ||||| | ||||||||||| || | Sbjct 735 AATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAAT 676 Query 41477 GTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||| || ||||| |||||||| || | ||| |||||||| Sbjct 675 GTAAAGACGGTTTTCGGTGCTGGTTATCCAATTACAAAA 637 >seq2823 Length=1025 Score = 297 bits (328), Expect = 5e-76 Identities = 408/565 (72%), Gaps = 8/565 (1%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| ||||||||| || || ||||| ||||| || ||||| ||||||||| Sbjct 563 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 504 Query 40584 CCTAGACTC-TGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 || ||| | | | ||| | || ||||||||||||| ||| || ||| | | || Sbjct 503 CCAAGATTAGTCGCGGTTGATAATATCAGCCCAAGTATTAATTACACGACCTTGACTATC 444 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 ||||| || || || || ||||||||||| | ||| ||||||||||| ||||| | Sbjct 443 AACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAA 384 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCT 40762 | ||| | ||| || || | || || ||||| | | |||||||||| | ||| Sbjct 383 AGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGA 324 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 ||||||||| ||||||||| || || | || ||||| ||||| || || |||||||| Sbjct 323 ATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGAT 264 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 ||||| || || | || ||||| || | || || | || |||||| |||| || Sbjct 263 ATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 204 Query 40883 GGTCTCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGC 40939 ||| |||| || | | |||| || ||| | || ||||||||| || | | Sbjct 203 GGTTTCCCTGATCAAACTAGAGG--TTACCAAAG-AACCATGCATAGCACTGAATAGGGA 147 Query 40940 ACCACCAAAGACGCCTGCAACGCCGAGCATAT-GGAATGGGTGCATGAGAATGTTGTGTT 40998 ||| ||||| || || || || || ||||| | | ||||||||||| || |||||||| | Sbjct 146 ACCGCCAAATACACCAGCCACACCTAGCATGTAGAAATGGGTGCATAAGGATGTTGTGCT 87 Query 40999 CTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAG 41058 | |||||||| |||| |||||||||||| || ||| |||||||| ||||||||| |||| Sbjct 86 CAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAG 27 Query 41059 AGAAAGAACCCTGACCGAATGGATA 41083 | || || ||||| | ||| || Sbjct 26 AAAAGCTTCCTTGACCAATTGGGTA 2 >seq2704 Length=1012 Score = 172 bits (190), Expect = 2e-38 Identities = 234/324 (72%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 ||||| || | ||| ||||| | ||||| || | ||| || || |||||||||| ||| Sbjct 1000 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCAT 941 Query 41253 TCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTC 41312 || || | | | |||||||| |||||||| || || | || || || ||| | Sbjct 940 TCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 881 Query 41313 GGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCA 41372 || | | || || || ||||||||||| ||||| | ||| || || ||||| || ||| Sbjct 880 GGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTCA 821 Query 41373 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGT 41431 || || ||||| |||||||| || ||||| || || || || || || || ||| | || Sbjct 820 CGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACA-GAAGT 762 Query 41432 AGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTC 41491 || || | ||| | || ||||| | ||||||||||| || | ||| || ||||| || Sbjct 761 TGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTC 702 Query 41492 GGTGCTAGTGACCCAGTTACAAAA 41515 |||||| || | ||| |||||||| Sbjct 701 GGTGCTGGTTATCCAATTACAAAA 678 >seq672 Length=1075 Score = 84.2 bits (92), Expect = 6e-12 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| ||||||||| || || ||||| ||||| || ||||| ||||||||| Sbjct 958 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 1017 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGAC 40627 || ||| | | ||| | || ||||||||||||| ||| || Sbjct 1018 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGTATTAATTAC 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143697198691632