Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq3048 562 3e-155 seq2823 361 6e-95 seq838 352 3e-92 seq929 324 2e-83 seq672 84.2 2e-11 >seq3048 Length=155691 Score = 562 bits (622), Expect = 3e-155 Identities = 701/958 (73%), Gaps = 12/958 (1%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| ||||| |||||||| || ||||| ||||| || |||||||||||||| Sbjct 426 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 485 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG--- 67469 ||||| || | ||| | || || ||||||||| ||| || || |||| Sbjct 486 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGTATTAATTAC---ACGACCTTGACTA 542 Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| || ||||| ||||| || ||||| || | |||||| |||||||| | ||| Sbjct 543 TCAACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCT 602 Query 67530 ATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTT 67589 | || ||||||||||| | || ||||| | ||||| | ||||||||| | | | Sbjct 603 AAAGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGA 662 Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 || ||||||||| ||||| ||||||||||| || || || || |||||||| || || Sbjct 663 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACG 722 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 || || || || ||||| ||||| ||||| ||||||| | || || || | || Sbjct 723 ATATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 782 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | ||| || || | |||||| ||||||||||| || || ||| Sbjct 783 GTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAA 842 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || || |||||||| || || || ||||| || |||||||||||||||||||||||||| Sbjct 843 CCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 902 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 |||||||| || | |||| |||| ||||||||||| || || |||||||| ||||||| Sbjct 903 GCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAA 962 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 || |||||||| | || |||| |||||| ||||| || || | || ||||| Sbjct 963 AAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCT 1022 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| |||||||| |||||||| |||||| || ||||||||||| |||| Sbjct 1023 GAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 1082 Query 68010 CC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCA 68066 || | || | ||| | || | | |||||| | || | || | |||| ||| Sbjct 1083 CCCATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCA 1139 Query 68067 CCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCG 68126 || || || ||||| ||||| | || || |||||||| || || || ||||| | ||| Sbjct 1140 CCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCT 1199 Query 68127 ATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAA 68186 || || ||| |||| | || ||||| ||||| || ||||| ||||| | | || Sbjct 1200 ATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGAT 1259 Query 68187 CCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATG 68246 || | ||||||||| | |||||||| ||||| || |||||||| |||||||| ||||| Sbjct 1260 CCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATA 1319 Query 68247 ATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 || || || | ||| | | || ||| |||||||| ||||| ||||| |||| Sbjct 1320 ATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAA 1377 >seq2823 Length=1025 Score = 361 bits (400), Expect = 6e-95 Identities = 416/556 (75%), Gaps = 8/556 (1%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| ||||| |||||||| || ||||| ||||| || |||||||||||||| Sbjct 563 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 504 Query 67413 CCAAGTCCTG-CTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG-- 67469 ||||| | | | ||| | || || ||||||||| ||| || || |||| Sbjct 503 CCAAGATTAGTCGCGGTTGATAATATCAGCCCAAGTATTAATTAC---ACGACCTTGACT 447 Query 67470 -TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACC 67528 ||||| || ||||| ||||| || ||||| || | |||||| |||||||| | ||| Sbjct 446 ATCAACTACAGATTGATTGAAATTAAAACCATTTAAGTTGAAAGCCATAGTGCTGATACC 387 Query 67529 CATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCT 67588 | || ||||||||||| | || ||||| | ||||| | ||||||||| | | | Sbjct 386 TAAAGCGGTGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACG 327 Query 67589 TGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAAC 67648 || ||||||||| ||||| ||||||||||| || || || || |||||||| || || Sbjct 326 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTAC 267 Query 67649 AATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTC 67708 || || || || ||||| ||||| ||||| ||||||| | || || || | || Sbjct 266 GATATTATAGGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 207 Query 67709 AGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGA 67768 || ||||| ||||| | | ||| || || | |||||| ||||||||||| || || || Sbjct 206 TGTGGTTTCCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGA 147 Query 67769 ACCACCGAATACACCTGCTACTCCAAGCATAT-GGAATGGGTGCATAAGGATGTTGTGCT 67827 ||| || |||||||| || || || ||||| | | ||||||||||||||||||||||||| Sbjct 146 ACCGCCAAATACACCAGCCACACCTAGCATGTAGAAATGGGTGCATAAGGATGTTGTGCT 87 Query 67828 CTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAG 67887 | |||||||| || | |||| |||| ||||||||||| || || |||||||| |||||| Sbjct 86 CAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAG 27 Query 67888 AGAAAGAACCTTGACC 67903 | || |||||||| Sbjct 26 AAAAGCTTCCTTGACC 11 >seq838 Length=1002 Score = 352 bits (390), Expect = 3e-92 Identities = 427/579 (74%), Gaps = 7/579 (1%) Strand=Plus/Plus Query 67730 AGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTAC 67789 ||| || || | |||||| ||||||||||| || || ||||| || |||||||| || || Sbjct 3 AGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAACCGCCAAATACACCAGCCAC 62 Query 67790 TCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTA 67849 || ||||| || |||||||||||||||||||||||||| |||||||| || | |||| | Sbjct 63 ACCTAGCATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAA 122 Query 67850 GTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGG 67909 ||| ||||||||||| || || |||||||| ||||||| || |||||||| | || Sbjct 123 GTTGAAAGTACCAGAGATTCCTAGAGGCATACCGTCAGAAAAGCTTCCTTGACCAATTGG 182 Query 67910 ATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCA 67969 |||| |||||| ||||| || || | || ||||| || ||||| ||| ||||| Sbjct 183 GTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCA 242 Query 67970 AGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC---ACAGTATGCTGTGAT 68026 ||| |||||||| |||||| || ||||||||||| |||||| | || | ||| | Sbjct 243 AGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAGCAAGCT---AC 299 Query 68027 TCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATC 68086 || | | |||||| | || | || | |||| ||||| || || ||||| ||||| Sbjct 300 ACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCACCGTTGTATAACCATTCATC 359 Query 68087 TAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAAC 68146 | || || |||||||| || || || ||||| | ||| || || ||| |||| | Sbjct 360 AACAGAAGCCGCTTCCCATATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGGAT 419 Query 68147 AACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTT-CTCTGA 68205 || ||||| ||||| || ||||| ||||| | | || || | |||||||| | | | Sbjct 420 AATGGCACCGGAAATAATATTGTTTCCGTAAAGTAAAGATCCAGAAACAGGTTACACGAA 479 Query 68206 TACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTG 68265 ||||||| ||||| || |||||||| |||||||| ||||| || || || | ||| | Sbjct 480 TACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCAATAATAAATACAGAAGTTGCGG 539 Query 68266 CGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAA 68304 | || ||| |||||||| ||||| ||||| |||| Sbjct 540 TCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAA 578 >seq929 Length=1222 Score = 324 bits (358), Expect = 2e-83 Identities = 402/548 (73%), Gaps = 7/548 (1%) Strand=Plus/Minus Query 67761 AAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATG 67820 || || ||||| || |||||||| || || || ||||| || |||||||||||||||||| Sbjct 1221 AATAGGGAACCGCCAAATACACCAGCCACACCTAGCATGTGAAATGGGTGCATAAGGATG 1162 Query 67821 TTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATT 67880 |||||||| |||||||| || | |||| |||| ||||||||||| || || |||||||| Sbjct 1161 TTGTGCTCAGCTTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCTAGAGGCATA 1102 Query 67881 GCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGAC 67940 ||||||| || |||||||| | || |||| |||||| ||||| || || | Sbjct 1101 CCGTCAGAAAAGCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCA 1042 Query 67941 ACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCC 68000 || ||||| || ||||| ||| |||||||| |||||||| |||||| || ||||||| Sbjct 1041 ACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCC 982 Query 68001 CACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGG 68057 |||| |||||| | || | ||| | || | | |||||| | || | || | Sbjct 981 CACTCACGACCCATATAGCAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCA 925 Query 68058 AAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAG 68117 |||| ||||| || || ||||| ||||| | || || |||||||| || || || ||| Sbjct 924 TAAGGGCCACCGTTGTATAACCATTCATCAACAGAAGCCGCTTCCCATATTGGGTAAAAG 865 Query 68118 TGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAC 68177 || | ||| || || ||| |||| | || ||||| ||||| || ||||| ||||| Sbjct 864 TGCAAACCTATAGCTGCAGAAGTAGGGATAATGGCACCGGAAATAATATTGTTTCCGTAA 805 Query 68178 ATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATG 68237 | | || || | ||||||||| | |||||||| ||||| || |||||||| |||||| Sbjct 804 AGTAAAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATG 745 Query 68238 AATGC-AATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAA 68296 || || ||| || || || | ||| | | || ||| |||||||| ||||| || Sbjct 744 AAAGCTAATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAA 685 Query 68297 CCAACCAA 68304 ||| |||| Sbjct 684 CCATCCAA 677 >seq672 Length=1075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| ||||| |||||||| || ||||| ||||| || |||||||||||||| Sbjct 958 TCAACAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATA 1017 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCAC 67456 ||||| || | ||| | || || ||||||||| ||| || Sbjct 1018 CCAAGATTAGCGCGGTTGATAATATCAGCCCAAGTATTAATTAC 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566925599311680