Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3 104 4e-17 seq4 91.5 3e-13 >seq3 Length=27879571 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| |||| |||| || | ||| || |||||||||||| Sbjct 13657137 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 13657078 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | || || || |||||||| || ||||| || || ||| Sbjct 13657077 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGA 13657018 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || ||||| || ||||| | ||| | ||| || || || || || Sbjct 13657017 GGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCC 13656958 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | ||| || ||||| || || || || || ||||| |||||||| Sbjct 13656957 ACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 13656908 Score = 96.9 bits (106), Expect = 6e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || ||||| || | |||| || | ||| || ||||||| Sbjct 13841293 ATTTGCATACCACCGCGCAGACGAAGCACTAATTGCAGAGTGGACTCCTTTTGAATATTA 13841352 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || || ||| || | || || || |||||||| || || ||||| Sbjct 13841353 TAGTCAGCAAGTGTCCTTCCATCCTCAAGCTGCTTGCCTGCAAAAATCAACCTTTGTTGG 13841412 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||| ||||| | ||| | ||| ||| || || || Sbjct 13841413 TCTGGGGGAATACCCTCCTTGTCTTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAG 13841472 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| | | | || ||||| || || || || || ||||| |||||||| Sbjct 13841473 CTTTCGACTTCCACAATGATGGTTTTGCCAGTAAGGGTCTTGACAAAGATTTGCAT 13841528 >seq4 Length=23292877 Score = 91.5 bits (100), Expect = 3e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 ||||| ||| || | ||| || || ||||| || | |||||||||||| ||||| || Sbjct 15563333 GTTCTGCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATG 15563392 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 |||||||| || || || |||| ||| | ||| || ||||| | ||| || || Sbjct 15563393 CCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTATCACTACTCTCGACCTCA 15563452 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 | ||| || || || || || || ||||| || || |||||||| || || Sbjct 15563453 ATAGTGATGGTCTTCCCGGTCAGAGTTTTCACGAAAATTTGCATATTGTT 15563502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899620123167360