Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3 107 3e-18 seq4 104 3e-17 seq2 104 3e-17 seq6 98.7 1e-15 >seq3 Length=27879571 Score = 107 bits (118), Expect = 3e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| || || || ||||| ||| ||| Sbjct 13656908 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 13656967 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| || ||||| || || || |||||||| || Sbjct 13656968 GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCTCCAGACCAG 13657027 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| || || | |||| |||||| Sbjct 13657028 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 13657087 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || || || || ||| Sbjct 13657088 AT-TCAAAAGGAGTCCACTCTGCACTTGGTG 13657117 Score = 100 bits (110), Expect = 4e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || || || || || |||| Sbjct 13775140 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 13775199 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || || || ||||| ||||| || || Sbjct 13775200 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 13775259 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| | | ||| || ||||||| ||| Sbjct 13775260 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTCTAGCAGATTACAAT 13775319 Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| ||| | || ||||| Sbjct 13775320 AT-TCAAAAGGAGTCAACCCTTCA 13775342 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || ||||||||||| || ||||| ||| || Sbjct 13774911 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 13774970 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || || || || || ||||||||||| || ||||| || Sbjct 13774971 AGACACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 13775030 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || |||||||| || ||| || || | ||||||| || Sbjct 13775031 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACAA 13775090 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || ||| | || || ||||| ||| Sbjct 13775091 CATACAGAAGGAGTCAACTCTGCATTTGGTG 13775121 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| ||||| || || || || || || |||| Sbjct 13656452 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 13656511 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || || |||||||| || || || ||||| || Sbjct 13656512 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 13656571 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || |||||||| || ||| | | || | | ||||| || Sbjct 13656572 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 13656631 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTG 156032 || || |||| || | || |||||||||||| Sbjct 13656632 AT-TCAAAAGGAGTCCACCCTTCATTTAGTG 13656661 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| || || || | || ||||| ||| Sbjct 183781 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAGAGCTCT 183840 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || |||||||| || ||||| || Sbjct 183841 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 183900 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||| |||||||| || ||| | | || || |||| || ||| Sbjct 183901 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGCCGCACCCTAGCAGACTACAAT 183960 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || ||||| ||| Sbjct 183961 ATCCAGAAGGAGTCTACCCTCCATTTGGTG 183990 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||| || || || || | || || ||| ||| Sbjct 13656224 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 13656283 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| |||||||| |||||||| || ||||| || Sbjct 13656284 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 13656343 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| |||||| ||| || ||||||||||| ||| Sbjct 13656344 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGAT 13656379 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || || || |||||||| |||||||| || || ||| |||||| ||| ||||||||| | Sbjct 9477574 CAGGACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTG 9477515 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 |||||| |||| | ||||||||||||| |||||| | || || || | ||| Sbjct 9477514 GAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTG 9477455 Query 156033 TTAAGATTAAGAGGCGG 156049 || || || || || || Sbjct 9477454 TTGAGGTTGAGGGGAGG 9477438 >seq4 Length=23292877 Score = 104 bits (114), Expect = 3e-17 Identities = 158/223 (71%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || || |||||||| || | ||||| |||| || || || || || | || ||||| Sbjct 15563502 AACAATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAG 15563443 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 | ||||| || || || ||| || || || || ||||||||||| |||||| Sbjct 15563442 AGTAGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCA 15563383 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || ||||| ||| |||| | ||| || ||||| || |||||| ||||||| | | ||| Sbjct 15563382 GATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGAT 15563323 Query 155997 TATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAG 156037 || | | ||||||| ||| |||| ||||| | ||||| || Sbjct 15563322 TACA--ACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAG 15563282 >seq2 Length=33308843 Score = 104 bits (114), Expect = 3e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| | |||||||| || || || || || || || |||| Sbjct 6938603 ATGCAGATCTTTGTGAAGACACTTACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 6938544 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || || |||||||| |||||||| || Sbjct 6938543 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAG 6938484 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| || ||| | | ||||| || Sbjct 6938483 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGGAGGACTCTGGCGGATTACAAC 6938424 Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| ||| |||| ||||| Sbjct 6938423 AT-TCAAAAGGAGTCGACCCTTCA 6938401 Score = 102 bits (112), Expect = 1e-16 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || ||||| ||||| || ||||| ||| || Sbjct 6938832 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 6938773 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||||| || || || || || ||||||||||| || ||||| || Sbjct 6938772 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 6938713 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || |||||||| || || ||| || | ||||||| || Sbjct 6938712 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 6938653 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| |||| || ||||| ||| Sbjct 6938652 CATTCAGAAAGAGTCGACTCTGCATTTGGTG 6938622 >seq6 Length=38222195 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || ||||| |||||||||| |||||||||||| | Sbjct 19322134 CAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTG 19322075 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAG 156030 |||||| |||||| | ||||||| | | ||||||| ||| | || ||||| ||| Sbjct 19322074 GAAGATGGAAGAACTCTTGCAGATTACA--ACATCCAAAAGGAGTCAACTCTTCACCTAG 19322017 Query 156031 TGTTAAG 156037 | ||||| Sbjct 19322016 TTTTAAG 19322010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731844115676800