Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 7e-15 seq5 87.8 4e-12 seq3 84.2 4e-11 seq2 84.2 4e-11 >seq6 Length=38222195 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||| | ||||| || || | ||| |||| || | ||| | ||| || ||| || ||| Sbjct 19321992 ATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAA 19322051 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || | | |||| | |||| |||||||| ||||| ||||| || ||||||||||||||| Sbjct 19322052 TCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCA 19322111 Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446 || || || ||||| ||||| || Sbjct 19322112 GGAGGGATGCCTTCCTTATCCTG 19322134 >seq5 Length=29328693 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||| | || || || |||| ||||| || || || || ||||| || || Sbjct 19804614 GATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCT 19804555 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || ||||| || || || || || |||||||| | || ||| ||||| || | Sbjct 19804554 TTGCTGATCCGGCGGGATACCCTCCTTATCTTGAACCTTGGCTTTGACATTGTCAATGGT 19804495 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || || || || || || ||||| || ||||| || || || | ||| ||||| Sbjct 19804494 ATCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTG 19804435 Query 192534 CAT 192536 ||| Sbjct 19804434 CAT 19804432 >seq3 Length=27879571 Score = 84.2 bits (92), Expect = 4e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 192345 CTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAA 192404 |||||| |||||||||||| | || || || |||| ||||| || || || || || Sbjct 6885900 CTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 6885841 Query 192405 GATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 192464 ||| || || || ||||| || || || || || |||||||| || || ||| ||||| Sbjct 6885840 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGGTTTGACATT 6885781 Query 192465 AGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT-TAATGTTTTAA 192523 || | ||| || ||||| || || || ||||| || | ||| || || || | Sbjct 6885780 GTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCAAGTCAAAAGTCTTCA 6885721 Query 192524 TAAATATCTGCAT 192536 ||| | |||||| Sbjct 6885720 CAAAAACCTGCAT 6885708 >seq2 Length=33308843 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || ||||| | ||| | |||||| || || ||||| Sbjct 6938602 ATCCCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCT 6938661 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| | | || || | || || || |||||||| | ||||| || || || Sbjct 6938662 GCCAGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGG 6938721 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || || || ||| || | ||||| ||| Sbjct 6938722 GGAATGCCTTCTTTGTCCTGAATCTTTGCCTTGACGTTATCAATTGTGTCTGAGCTTTCC 6938781 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | |||||||||||| || || || || || | ||| || |||||| Sbjct 6938782 ACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 6938832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984441553594800