Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 125 2e-23 seq6 120 9e-22 seq3 84.2 6e-11 >seq1 Length=22681039 Score = 125 bits (138), Expect = 2e-23 Identities = 234/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||||| | |||||| || |||||| ||| | | | | Sbjct 8155040 ATTTCTCACAGTCCCGTCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 8155099 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| |||||| || || || ||||| || ||||| | | ||| || Sbjct 8155100 CTGGATATACCCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 8155159 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | ||| | || ||| |||| || | || | || || || Sbjct 8155160 CATAGCATGAAAGAAGAACTCCTGTGGAGTTAGTCCCCGAAGGTATGAATTTTCTACAAA 8155219 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || ||||| |||| || | || | | | Sbjct 8155220 GCCACGACTTTCTGGTCCATAGTCGTCCTTAGTGAAGTGGGGCAAAGTACGGTCTATGA- 8155278 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||||||| || || || ||||| ||||||||||||| || | | ||||||| | Sbjct 8155279 ACCCATATGGGATTCGTTTACCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGTG 8155338 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | || || | | ||| ||||| || || || | |||||| Sbjct 8155339 ATATGTTGATAAAACTTCCCTTAGATCCGGCTGTAACCATA 8155379 Score = 125 bits (138), Expect = 2e-23 Identities = 234/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| |||||| | |||||| || |||||| ||| | | | | Sbjct 8163599 ATTTCTCACAGTCCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 8163658 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||||||||| |||||| || || || ||||| || ||||| | | ||| || Sbjct 8163659 CTGGATATAACCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 8163718 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | ||| | || ||| || || | || |||| || || Sbjct 8163719 CATAGCATGAAAAAAGAACTCCTGTGGAGTTAGTCCTTGAAGGTATGAATTCTCTACAAA 8163778 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || || ||||||| || | || | | | Sbjct 8163779 GCCACGACTTTCAGGTCCATAGTCGTCCTTAGTGAAATGTGGCAAAGTACGGTCTATGA- 8163837 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 |||| ||||| || || || || ||||| ||||||||||| | || | | ||||||| | Sbjct 8163838 AGCCATATGGAATTCGTTTACCCTCAACATTCTGCTGTCCAACACAAGCAGTCATCTGTG 8163897 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | ||||| | | ||| ||||| || || || | |||||| Sbjct 8163898 ATATATTGATAAAACTTCCCTTTGATCCGGCTGTAACCATA 8163938 Score = 100 bits (110), Expect = 8e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 156045 AAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| |||| ||||| ||||| ||| ||||| ||||| || ||||| | ||| || || Sbjct 15714613 AAAGTACCTTTCCTTTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACT 15714554 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | ||||||||||| || |||||||| || ||||| ||||| ||||||| |||| Sbjct 15714553 CGCAGCATAGGAATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTG 15714494 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | |||| || |||| | | ||||| || || | |||| || ||| ||| Sbjct 15714493 GCACGAATGTTGTGAACAGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACAT 15714434 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | |||| | || |||||||| |||||||| ||| Sbjct 15714433 TCCTTCAAGGTATCATATATGCCTTCAATGCTATCATCTTTCAT 15714390 Score = 95.1 bits (104), Expect = 4e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| ||||||| ||||| ||||| | ||||| | |||||||||||| |||| Sbjct 8162904 ACACCAGCATAGTGGAATGTATTGAGAGTCATCTGAGTGGCAGGCTCACCAATAGATTGT 8162963 Query 301924 GCCGCAATCATACCAACCATTTCTCCTGGTGCTACAA 301960 || |||| ||||||| |||||| || |||| ||||| Sbjct 8162964 GCAGCAACAATACCAATCATTTCCCCAGGTGATACAA 8163000 >seq6 Length=38222195 Score = 120 bits (132), Expect = 9e-22 Identities = 313/471 (66%), Gaps = 16/471 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 ||||| || ||||| |||||||| | |||| ||| | | || ||| |||||| Sbjct 16169335 ATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAAACCATCC 16169394 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || ||| |||| |||||||| || ||||| ||||||||||| |||| || Sbjct 16169395 ATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTG---CCTC------CA 16169445 Query 289009 CCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||||||| |||| || | | || Sbjct 16169446 CCA-ATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 16169504 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 || | |||| | || | ||| | || | || || || || |||| |||||| Sbjct 16169505 AGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 16169564 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | ||||||| ||||| |||||| | || | | || | || | ||| ||||| || | Sbjct 16169565 AAACATTTCAACAAACTCAGAACCTGAGA-TAGAGAAAAAAGGAACACCAGCTTCACCAG 16169623 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | |||| | || || || ||||| || ||||| || || || | | ||||| || | Sbjct 16169624 CAATTGCCTTTGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCCTT 16169683 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| ||| | || ||||||| ||||||| || || || | || Sbjct 16169684 TAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCACTT 16169743 Query 289304 CCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 || ||| || | || || ||||| || || |||||| |||| |||| Sbjct 16169744 CCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATCATCAAATGTAA 16169794 Score = 120 bits (132), Expect = 9e-22 Identities = 280/419 (67%), Gaps = 14/419 (3%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 ||||||||||||| || | || ||||| | ||| || ||||| ||||||||| | Sbjct 31851013 TAAATCCATCCATTTCAGTAAGAAGCTGATTCAATGTCTGCTCCCTCTCATCATTT---C 31850957 Query 288998 CTCTTGAATCACCCGAATCGC-TCCtttttt---tACCAACAGCATCAATTTCGTCAATG 289053 ||| |||| || || ||| | ||| | |||||||||||||| || |||||| Sbjct 31850956 CTC------CACC-GATTCCTGTCCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATG 31850904 Query 289054 AAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCT 289113 |||| || ||||| ||||| | | |||| | || || |||||||| | || ||| Sbjct 31850903 AAAACCAAGCACGGCGAATTATCTTTCGCCTTGTTGAACAAGTCTCTTACTCTAGAAGCT 31850844 Query 289114 CCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTT 289173 || | || ||| |||| || | || || || | || | || ||| | || | Sbjct 31850843 CCTACTCCTACAAACATCTCAATGAACTCCGACCCTGACAGAGAAAAGAAAGGCACCCCT 31850784 Query 289174 GCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAAT 289233 || || ||||| | ||| | ||||| |||||||| || || || || || || |||| Sbjct 31850783 GCCTCTCCTGCAATGGCCTTGGCCAGCAGTGTCTTTCCGGTCCCCGGCGGCCCTACTAAA 31850724 Query 289234 AGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 || || || || || | | |||| || | | | | ||||| || | | | |||| Sbjct 31850723 AGTACCCCTTTAGGAATTCTTGCACCTACTGCAGCAAACTTCTCTGGAGTTCTCAGAAAT 31850664 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || || || || | | || | ||||| |||||| ||| || |||||| |||| || Sbjct 31850663 TCAACTATCTCTTGGAAATCTTGCTTTGCTTCATCAACTCCAGCCACATCATCAAATGT 31850605 Score = 87.8 bits (96), Expect = 5e-12 Identities = 210/315 (67%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| |||||||| || ||||| || || | || || | | |||||| || | | Sbjct 8885703 CCAATTGCATCAATCTCATCAATAAATATTATACTGGGTGCACATTGTCTTGCCTCTTGA 8885644 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| | || | |||| |||| ||||||| ||||||| | ||| || ||| | Sbjct 8885643 AATAAACTCCGAACCCTTGATGGCCCAACACCAACAAACATTTCCATAAAATCCGAACCA 8885584 Query 289150 GATACTTGAATGAA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 | | | || ||| || || | ||| | |||| |||| | || | ||| || || Sbjct 8885583 GCCA-TAGAGAGAAATGGCACCCCGGATTCACTTGCTGTTGCCTTTGCAATAAGAGTTTT 8885525 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT 289268 || |||||||| || || | | || | || ||||| | |||||| || || Sbjct 8885524 TCCAGTTCCAGGAGGGCCAACAAGAAGGGCACCTTTTGGAATTTTTGCTCCCAATTCCTC 8885465 Query 289269 ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATC 289328 ||||||| |||| |||| | || | |||| |||| || ||| | || |||||||| Sbjct 8885464 GTATTTCTTAGGGTTCTTGAGGAAGTGCACAAATTCCATAATTTCTTGCTTAGCCTCATC 8885405 Query 289329 ACATCCTGCTACATC 289343 ||| || |||||||| Sbjct 8885404 ACAGCCAGCTACATC 8885390 >seq3 Length=27879571 Score = 84.2 bits (92), Expect = 6e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| || |||||||| ||||| |||||||| || |||| || | |||||||||| Sbjct 8527468 AGCACCATGGGCAATCATGCAATCTCGTTCCATCTCTCCAAATCGTAAACCACCATCACG 8527409 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 |||| |||| | | ||| | ||| | || | |||||| || |||| ||| Sbjct 8527408 GGACCGTCCCTCAGCAGGTTGCCTAGTAAGAATTTGTACAGGACCCCGACCACGTGAATG 8527349 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 || ||||| | ||||||||||||| |||| ||||| Sbjct 8527348 GATCTTATCATCGACCATATGCTTCAATCTCTGGTAATA 8527310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471760121843176