Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6 219 5e-51 seq2 93.3 5e-13 seq5 87.8 2e-11 seq1 87.8 2e-11 >seq6 Length=38222195 Score = 219 bits (242), Expect = 5e-51 Identities = 227/295 (77%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||||| ||||| | | |||| | || ||| Sbjct 28139325 GAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGG 28139384 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||||| ||||| || |||||| |||||||||||| ||||||||| Sbjct 28139385 ACCTCCTTCATGAACCTTCCGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCGGCGAAG 28139444 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||||||| |||| ||||| |||| || | | || | |||||||| || Sbjct 28139445 AAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGG-CG 28139503 Query 869813 GT-GTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | ||| ||| || ||||||||||||||||||| ||| ||||||||||| ||||| Sbjct 28139504 CTGGTCTTGATCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTGTA 28139563 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTG 869926 ||||||||| | | | |||| | || ||||| | | || |||| |||||| Sbjct 28139564 CATCTCCCAGATCTCCGGGTATTGAATCGGGAACATGCAGAACCGGTCCGGGTTG 28139618 >seq2 Length=33308843 Score = 93.3 bits (102), Expect = 5e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 1592135 GACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAAC 1592194 ||||| || || ||||||||||| | | ||| ||||| |||| | || |||||| Sbjct 4836415 GACAAAGAATTCGTCGACGTCGAGCTGGGCCTCCTGTTTGATCTGATATTGGCAGCCAAC 4836356 Query 1592195 TACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAACATGATCAA 1592253 || || |||||||| ||||| || |||| ||| || ||||||| |||||||||| Sbjct 4836355 TATCTGAACATCAAGGAGCTGCTAGA-CTTGACATGCCAGACTGTGGCAGACATGATCAA 4836297 Query 1592254 GGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||| ||| | ||||| ||||| ||| || || |||||| Sbjct 4836296 GGGAAAGACTCCCGAAGAGATTCGCCGGATTTTCAACATC 4836257 >seq5 Length=29328693 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || ||||| |||| | || |||||||| || |||||||| ||||| || |||| Sbjct 16453270 CTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTGCTGGA-CTTGAC 16453328 Query 1592228 -TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 || || ||||||| ||||||||||||| ||| | ||||| |||| |||||||| || Sbjct 16453329 ATGTCAGGCTGTGGCGGACATGATCAAGGGAAAGACTCCCGAACAGATTCGCAAGACTTT 16453388 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 16453389 CAACATCAAG 16453398 >seq1 Length=22681039 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||||||| || || ||||| ||| || |||||||| || Sbjct 234747 GCTGCTAACTATCTGAACATCAAGGGCCTTCTGGATCTGACTTGCCAGACTGTGGCCGAC 234806 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || || |||||||||||||| || ||||| ||| Sbjct 234807 ATGATCAAGGGGAAGACTCCAGAAGAGATCCGCAAGACTTTCAACATTAAG 234857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106889066846216