Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6 197 2e-44 >seq6 Length=38222195 Score = 197 bits (218), Expect = 2e-44 Identities = 235/318 (74%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| ||| || || ||||| | |||||||| || ||| Sbjct 28139054 TCGCGA--GATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCCGCGCTTTTTTAGC 28139111 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || || ||||| || |||||||| ||||| || || ||| ||| ||| | ||| Sbjct 28139112 CAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCAGGCGAAGGCCACG 28139171 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | |||||| || ||||| || ||| || |||||| |||| ||||||| ||| Sbjct 28139172 ATCCGCTCCGCGAAAGTTTCGGAGCCGTC------GATCCATTTCAGGGCCCACTGCGCC 28139225 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 |||||| || | || | ||||||| ||| || ||||| || ||||||| ||| | Sbjct 28139226 TTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGGAAGAGACGGGACTTCTCGTCCGAG 28139285 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 || |||| |||||| |||| |||||| ||| |||| ||||||||||| || || ||| Sbjct 28139286 TCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCAATCGCG 28139345 Query 794647 ATCTGGAAGCCATAAAAG 794664 ||||||||||| || ||| Sbjct 28139346 ATCTGGAAGCCGTAGAAG 28139363 Score = 170 bits (188), Expect = 3e-36 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | || ||||||||||||||||| | ||||| || ||||| ||||||||| Sbjct 28139370 GCCTCCGAGACCTGGACCTCCTTCATGAACCTTCCGGCAAGATTCTCGAGTACGATGCCG 28139429 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||| |||||||||||||| |||| ||||| |||| || | | || Sbjct 28139430 TCGGAGGCGGCGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGG 28139489 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | |||||||| | ||| |||| |||||||||||||||||||| || || ||| Sbjct 28139490 GTTTCCCAGTGGCGCTGGTCTTGATCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCC 28139549 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||| |||||||||||||| ||| |||| | || ||||||| Sbjct 28139550 TCGGCCTTCTTGTACATCTCCCAGATCTCCGGGTATTGAATCGGGAACA 28139598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915922170338072