Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq2 118 8e-22 seq4 114 1e-20 seq3 98.7 8e-16 seq6 95.1 1e-14 >seq2 Length=33308843 Score = 118 bits (130), Expect = 8e-22 Identities = 155/212 (73%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || ||||| || || ||||||||||| | ||| ||| ||| Sbjct 6938832 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 6938773 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | || || ||||||| || ||||||||| | ||| || | Sbjct 6938772 A-GACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACC 6938714 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||| | ||| || || ||||| ||||||| || ||| |||| || |||| Sbjct 6938713 AGCAGAGGCTTATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACA 6938654 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| || ||||| || |||| ||||| Sbjct 6938653 ACATTCAGAAAGAGTCGACTCTGCATTTGGTG 6938622 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| ||||||||| ||||||||| | ||| | || ||| Sbjct 6938945 GATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGAC 6938886 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||||| ||||| |||||| |||| Sbjct 6938885 TACAACATTCAAAAGGAATCTACCTTGCACTTGGT 6938851 >seq4 Length=23292877 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||||||||| || |||||| | || || || ||||| || | || ||| | Sbjct 15563499 AATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGT 15563440 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | ||||| ||| | | || ||| ||||| || ||||||||| | || ||| Sbjct 15563439 AGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCAGAT 15563380 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || |||||||| || | ||| || || || ||||| || | || ||| | ||||| ||| Sbjct 15563379 CAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGATTAC 15563320 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||| ||||||||||| || | ||| |||||||||| Sbjct 15563319 AACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAG 15563282 >seq3 Length=27879571 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || || || || | || ||| ||| Sbjct 13774683 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 13774742 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| |||||| || || || || | ||| |||| Sbjct 13774743 T-GATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 13774801 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||| ||||||||| | ||| | || ||||||| Sbjct 13774802 AGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACA 13774861 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || || |||||| |||| Sbjct 13774862 ACATTCAAAAGGAATCAACATTGCACTTGGT 13774892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||| | || || |||||||| ||| | || ||| | Sbjct 13656452 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 13656511 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||||| |||||||| || | || || ||| Sbjct 13656512 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 13656571 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| ||||| | | || |||| || |||||| Sbjct 13656572 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 13656631 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 13656632 ATTCAAAAGGAGTCCAC 13656648 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | |||||||| || || ||| |||| || ||| Sbjct 13774228 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 13774287 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || |||||| || || || || | ||| || || Sbjct 13774288 -GACACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 13774346 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || || ||||| ||||||| | |||| | || |||||||| Sbjct 13774347 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAA 13774406 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||| ||||| || | ||| ||||| | ||| | || || || Sbjct 13774407 CATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACTCCGTGGTGG 13774454 >seq6 Length=38222195 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||| ||||| |||| ||||| ||||| ||| |||| ||| ||| Sbjct 34520504 ATGCAAATTTTTGTGAAAACCCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCTC- 34520446 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || |||| | | || || ||||| || || || ||| | || || || Sbjct 34520445 CGACACCGTCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCA 34520386 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| ||||||| | || | || |||||||| Sbjct 34520385 GCAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACCCTCGCCGACTACAA 34520326 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| ||||| Sbjct 34520325 CATCCAGAAGGAGTCGACTCTCCACCTGGTG 34520295 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| ||||| || ||||||||| | || ||| ||| Sbjct 34537722 ATGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATTACCCTGGAGGTTGAGAGCTC- 34537664 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || ||||| ||||| ||||| | || |||||| Sbjct 34537663 CGATACAATTGATAACGTCAAGGCCAAGATCCAGGATAAGGAAGGGATCCCACCGGATCA 34537604 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | || || || || ||||||| | || || | ||||| ||||| Sbjct 34537603 GCAGAGGTTGATCTTCGCTGGAAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTACAA 34537544 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || ||||| ||||| Sbjct 34537543 TATCCAGAAGGAGTCCACCCTGCACTTGGTG 34537513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| |||||||| ||||| || | || ||| ||| | Sbjct 34519820 ATGCAGATTTTTGTGAAGACTTTGACAGGCAAGACCATCACTTTGGAGGTTGAGAGCTCG 34519761 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||| ||||| ||||| | || ||| || Sbjct 34519760 -GATACCATTGATAATGTCAAAGCCAAGATCCAGGATAAGGAAGGGATCCCACCGGACCA 34519702 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | || | ||| || || ||||| ||||||| || |||| || ||||| Sbjct 34519701 GCAAAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCTGATTACAA 34519642 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| |||||||| || | ||| |||| Sbjct 34519641 CATTCAGAAGGAGTCCACCCTTCACTTGGT 34519612 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| || || | ||| ||||||||||||| | || | ||| ||||| ||| ||||| Sbjct 34537857 GATAAGGAGGGAATTCCCCCGGATCAGCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAG 34537798 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| || || |||| || ||||| || || |||||||| || | ||| ||||| | Sbjct 34537797 GACGGCAGGACCCTGGCCGATTACAATATCCAGAAGGAGTCGACCCTTCACTTGGTGCTC 34537738 Query 107769 AGATTGCGAGGGG 107781 |||| |||||| Sbjct 34537737 CGATT--GAGGGG 34537727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398861982724072