Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 3e-14 seq6 84.2 5e-11 >seq1 Length=22681039 Score = 95.1 bits (104), Expect = 3e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | || || |||||| | ||||| || |||||||||||| Sbjct 8156642 CATTTGAATGATGGAGACTTTGTCCTCTTCAATCGTCAACCCAGTCTCCATAAAATGTCT 8156583 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 || |||| || | | ||||| | | || | || |||||| |||| | || Sbjct 8156582 ATTATGGGGCACAGAATCAAAATCATGCCTTACTCAACTTTTCGACTAAACCTCTCTGTC 8156523 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | ||||||| ||||| ||||||||||| ||||||||||||||||| || || || ||| Sbjct 8156522 ACTTCGCCTTACAATGCTGATTTTGATGGGGATGAAATGAATATGCACGTTCCCCAGTCA 8156463 >seq6 Length=38222195 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/160 (73%), Gaps = 7/160 (4%) Strand=Plus/Minus Query 305331 TTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAG 305390 |||| ||||| ||||||||| ||||| |||||| | ||| ||||| | ||| Sbjct 34527101 TTCTTTTCAACAGGCAACCAAGCTTGCATCGTATGTCTGTCATGTGTCATAGGGC--AAG 34527044 Query 305391 TATTAT-CTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGC 305445 ||||| | | |||| || || | || |||| | || ||| | ||||||||||| Sbjct 34527043 GATTATGCCGCATTGGAGGACGTTGAGGTTTAATGAATCTGTTTGCAACCCTTATAATGC 34526984 Query 305446 GGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||||||| ||||||||||||| ||||| || ||| Sbjct 34526983 TGATTTTGATGGTGATGAAATGAATACTCATGTCCCACAA 34526944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186766451993128