Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq3 102 5e-17 seq2 93.3 3e-14 seq6 86.0 4e-12 seq4 86.0 4e-12 >seq1 Length=22681039 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || |||||||| |||| ||| || || |||| || Sbjct 22555150 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTC 22555209 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||||||||| || || | |||||||| || |||| | || || ||||| Sbjct 22555210 GAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTG 22555269 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || ||| |||| || | ||||||| || ||||| || | ||||||||| | Sbjct 22555270 GATCTTGGCCTTC-ACATTATCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCT 22555328 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 22555329 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 22555359 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || |||||||| ||| ||| || || |||| || Sbjct 22583168 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGACGGCGAGAGTCCGGCCGTCCTC 22583227 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | | ||||||| | || || | || ||||| || |||| | || || ||||| Sbjct 22583228 GAGCTATTTTCCGACGAAGATAAGGCGTTGCTGGTCCAGCGGGATGCCCTCCTTGTCTTG 22583287 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| ||| ||| | ||||||| || ||||| || | ||||||||| | Sbjct 22583288 GATCTTGGCCTTCA-CATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCT 22583346 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 22583347 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 22583377 >seq3 Length=27879571 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || |||||| ||| ||||| || || || || | Sbjct 13657135 ACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGC 13657076 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || || | || || || ||||||||||| | |||||| ||| | || Sbjct 13657075 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGAGG 13657016 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || || || |||||| |||| |||| || | |||||| ||| || Sbjct 13657015 AATACCCTCCTTATCCTGAATTTTAGCTTTC-ACATTATCTATGGTGTCAGAGCT---TT 13656960 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| ||||| || || | || || |||||||| ||||| Sbjct 13656959 CCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 13656908 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| ||||| ||| || |||||||||||||| | Sbjct 13775138 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 13775079 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | || ||||| ||||| || | | |||||| ||| | || Sbjct 13775078 AGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 13775019 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||| || || | |||| || | ||||| ||| ||| Sbjct 13775018 ATGCCTTCTTTGTCCTGAATCTT-TGCCTTGACATTATCAATTGTGTCTGAGCT---TTC 13774963 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || ||||| ||||| || || || |||||||| ||||| Sbjct 13774962 CACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 13774912 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| || || |||||| ||| ||||| || || || || | Sbjct 13841301 ACCACCGCGCAGACGAAGCACTAATTGCAGAGTGGACTCCTTTTGAATATTATAGTCAGC 13841360 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || || | || || || ||||||||||| | || || ||| | || Sbjct 13841361 AAGTGTCCTTCCATCCTCAAGCTGCTTGCCTGCAAAAATCAACCTTTGTTGGTCTGGGGG 13841420 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || ||||| |||||| |||| |||| || | |||||| ||| || Sbjct 13841421 AATACCCTCCTTGTCTTGAATTTTAGCTTTC-ACATTATCAATGGTGTCAGAGCT---TT 13841476 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || |||| ||||| || || | || || |||||||| ||||| Sbjct 13841477 CGACTTCCACAATGATGGTTTTGCCAGTAAGGGTCTTGACAAAGATTTGCAT 13841528 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||||||| || || ||| || || ||||||||||| | Sbjct 183780 ACCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 183721 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | || || || ||||| |||| ||||||||| || | || Sbjct 183720 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 183661 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || | | ||| | ||| | |||||| || |||| Sbjct 183660 GATTCCCTCCTTGTCCTGAATCTT-GGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCA 183602 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | ||||| || || || ||||| Sbjct 183601 CCTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 183553 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| ||||||||| || |||||||| | | Sbjct 13774682 CCACCACGAAGACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCG 13774623 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||| |||||||| || | | |||||||||| | || Sbjct 13774622 AGCGTACGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGG 13774563 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || ||||| ||| || || | |||| || | ||||| ||| || Sbjct 13774562 ATGCCCTCCTTGTCCTGAATCTT-TGCCTTGACATTATCGATTGTGTCAGAGCTC---TC 13774507 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || ||||| | || || |||||||||||||| Sbjct 13774506 AACCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 13774456 >seq2 Length=33308843 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| || | || || ||||| |||||||| || | Sbjct 6938833 CCACCACGCAGACGGAGAACCAAGTGCAAGGTAGATTCCTTTTGAATGTTGTAGTCTGCA 6938892 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | |||| ||||| ||||| || ||||| || | | |||||||||| | || Sbjct 6938893 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGG 6938952 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||| || ||||| ||||| || | |||| |||| || ||| |||||| Sbjct 6938953 ATACCCTCCTTGTCCTGGATTTT-TGCCTTGACATTGTCAATTGTATCGGAGCTTTCCAC 6939011 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||| ||||||||||||||||| Sbjct 6939012 CTCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 6939059 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| ||||| |||||| || ||||||||||| | Sbjct 6938605 CCACCACGTAGACGGAGCACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCC 6938664 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| || | || ||||| ||||| || | | |||||| ||| | || Sbjct 6938665 AGTGTCCTGCCGTCCTCAAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGGGGA 6938724 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||| || || | || | || | ||||| ||| ||| Sbjct 6938725 ATGCCTTCTTTGTCCTGAATCTT-TGCCTTGACGTTATCAATTGTGTCTGAGCT---TTC 6938780 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || ||||| || || || || || ||||| || ||||| Sbjct 6938781 CACTTCCAAAGTAATGGTTTTCCCGGTCAAAGTCTTCACAAAAATTTGCAT 6938831 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||||||| |||||||| || | |||||| || |||| || Sbjct 6939306 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTATTCAGCGAGTGTCCGCCCGTCCTCA 6939365 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| |||| | || | || | || | || || ||||| Sbjct 6939366 AGCTGCTTGCCAGCAAAGATCAGCCTTTGTCGGTCCGGGGGAATTCCCTCCTTGTCTTGG 6939425 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 || || || || |||| |||| ||||| |||| || || |||| ||||| || Sbjct 6939426 ATCTT-TGCTTTGACATTGTCAATAGTGTCAGAGCTT---TCAACCTCAAGGGTGATGGT 6939481 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| | ||||| |||||||||||||| Sbjct 6939482 CTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 6939514 >seq6 Length=38222195 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || |||||||| |||| | ||||| |||| || | || |||||||| || | Sbjct 22063131 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 22063072 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | |||||||||||| | || | ||||| ||||| || || | | |||| | Sbjct 22063071 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTT-GGCCTTGACATTG 22063013 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||||||||| ||||| || | ||||| || || || |||| ||||| || Sbjct 22063012 TCGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACG 22062953 Query 33739 AAGATCTGCATAGTTGGTG 33757 || |||||||| ||| || Sbjct 22062952 AATATCTGCATCTTTGCTG 22062934 >seq4 Length=23292877 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || ||||| ||| || || |||||||| |||| ||| ||||| |||| || | || Sbjct 18773396 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 18773337 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | |||||||| || |||| | || || ||||| || || Sbjct 18773336 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 18773277 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | | | ||| | ||||||| || ||||| || | ||||| || || || || Sbjct 18773276 GCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGT 18773218 Query 33726 TAACGTTTTTACAAAGATCTGCATAGTTG 33754 || ||||| || ||||||||||| |||| Sbjct 18773217 TAGGGTTTTCACGAAGATCTGCATGGTTG 18773189 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||||| || ||||| ||| ||||| ||||||||||| | || || | | || Sbjct 15563285 AACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCATCT 15563344 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 |||| ||| || || ||||| |||| | ||| |||||| | || | ||||||||||| Sbjct 15563345 TCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTGTCC 15563404 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 || || | || |||| ||| | ||| || || || || |||| ||||| || Sbjct 15563405 TGGATCTT-GGCTTTGACATTGTCGATGGTATCACTACTCTCGACCTCAATAGTGATGGT 15563463 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || | ||||| || || || |||||| Sbjct 15563464 CTTCCCGGTCAGAGTTTTCACGAAAATTTGCATA 15563497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328691789468160