Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq3048 587 2e-163 seq2823 401 2e-107 seq838 342 2e-89 seq929 320 5e-83 seq2704 120 9e-23 seq672 105 2e-18 >seq3048 Length=155691 Score = 587 bits (650), Expect = 2e-163 Identities = 722/970 (74%), Gaps = 16/970 (2%) Strand=Plus/Minus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 1396 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 1337 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || || |||| || |||||||| |||||||| || || || || || |||||||| || Sbjct 1336 GCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTAT 1278 Query 19645 CCGCGAACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCG 19703 || ||||| || || || | | || ||||| |||||||| || || || || ||| | Sbjct 1277 TCGTGAACCTGTTTCTGG-ATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTA 1219 Query 19704 TTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACT 19761 | || | | ||| || || || | ||||| |||||||| |||||||| ||| | Sbjct 1218 TCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGT 1161 Query 19762 TGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGG 19821 |||||||||| | |||||||| || || | | || | || | |||||| | |||| Sbjct 1160 TGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 1101 Query 19822 CAT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCT 19879 | || |||| | ||||| || |||||||||||||| | || || || ||| | ||| Sbjct 1100 TGTAGCT-TGCT-ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCT 1043 Query 19880 TGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTA 19938 |||||| |||||| || || ||||| |||||||| || |||| || ||||| | |||| Sbjct 1042 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTA 984 Query 19939 CCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAA 19998 ||| ||||||| || ||||| || || | ||||||| | || ||||| ||||| ||||| Sbjct 983 CCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAA 924 Query 19999 CTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGG 20058 || |||| | ||||||||||| || || ||||| || |||||||| || |||||||| || Sbjct 923 CTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGG 864 Query 20059 TGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTC 20118 ||||||||||||||| || || || ||||||||||| ||||| ||||| | || || || Sbjct 863 TGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTC 804 Query 20119 CTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGC 20177 | | ||| | | || || || ||| | ||| | || | ||||||| || || | Sbjct 803 -TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTC 745 Query 20178 AAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCC 20237 |||| ||||| |||||||| |||||||||||||||||||| ||||| || |||||||||| Sbjct 744 AAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCC 685 Query 20238 AATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGG 20297 |||| ||| |||||||||| |||||| ||||||||||| | ||||| ||||| || | Sbjct 684 AATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAG 625 Query 20298 TAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCA 20357 |||| || |||||| | || || || | || ||||| || || | || ||||| | Sbjct 624 TAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTA 565 Query 20358 ACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTC 20417 | || || || || | | || | | |||||||| ||| ||||||||||||| ||| Sbjct 564 ATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTA 505 Query 20418 TCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCAC 20477 |||| || |||||||| || | || || ||||||||||| ||||||||||| ||||| | Sbjct 504 TCAACCGCGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTC 445 Query 20478 TTGACCTTGC 20487 | ||||| || Sbjct 444 TAGACCTAGC 435 >seq2823 Length=1025 Score = 401 bits (444), Expect = 2e-107 Identities = 425/555 (77%), Gaps = 4/555 (1%) Strand=Plus/Plus Query 19936 CTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTT 19995 |||||| ||||||| || ||||| || || | ||||||| | || ||||| ||||| || Sbjct 1 CTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTT 60 Query 19996 CAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCC-ACATGC 20054 ||||| |||| | ||||||||||| || || ||||| || |||||||| || | |||||| Sbjct 61 CAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGC 120 Query 20055 TTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTA 20114 | ||||||||||||||||| || || || ||||||||||| ||||| ||||| | || | Sbjct 121 TAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAA 180 Query 20115 CGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTT 20173 | || | | ||| | | || || || ||| | ||| | || | ||||||| || Sbjct 181 CCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 239 Query 20174 GGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATC 20233 || ||||| ||||| |||||||| |||||||||||||||||||| ||||| || |||||| Sbjct 240 GGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 299 Query 20234 TTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCG 20293 |||||||| ||| |||||||||| |||||| ||||||||||| | ||||| ||||| Sbjct 300 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCT 359 Query 20294 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 20353 || ||||| || |||||| | || || || | || ||||| || || | || ||| Sbjct 360 GTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGT 419 Query 20354 TTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 20413 || || || || || || | | || | | |||||||| ||| ||||||||||||| Sbjct 420 TTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGAT 479 Query 20414 ATTCTCAATCGTG-CTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTT 20472 ||| |||| || | ||||||| || | || || ||||||||||| ||||||||||| || Sbjct 480 ATTATCAACCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTT 539 Query 20473 CCCACTTGACCTTGC 20487 ||| || ||||| || Sbjct 540 CCCTCTAGACCTAGC 554 >seq838 Length=1002 Score = 342 bits (378), Expect = 2e-89 Identities = 438/589 (74%), Gaps = 15/589 (3%) Strand=Plus/Minus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 597 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 538 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || || |||| || |||||||| |||||||| || || || || || |||||||| || Sbjct 537 GCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTAT 479 Query 19645 CCGCG-AACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTC 19702 || | |||| || || || | | || ||||| |||||||| || || || || ||| | Sbjct 478 TCGTGTAACCTGTTTCTGG-ATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATT 420 Query 19703 GTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCAC 19760 | || | | ||| || || || | ||||| |||||||| |||||||| ||| Sbjct 419 ATCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTG 362 Query 19761 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 19820 ||||||||||| | |||||||| || || | | || | || | |||||| | ||| Sbjct 361 TTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTG 302 Query 19821 GCAT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCC 19878 | | || |||| | ||||| || |||||||||||||| | || || || ||| | || Sbjct 301 GTGTAGCT-TGCT-ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCC 244 Query 19879 TTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCT 19937 ||||||| |||||| || || ||||| |||||||| || |||| || ||||| | ||| Sbjct 243 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCT 185 Query 19938 ACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCA 19997 |||| ||||||| || ||||| || || | ||||||| | || ||||| ||||| |||| Sbjct 184 ACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCA 125 Query 19998 ACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTG 20057 ||| |||| | ||||||||||| || || ||||| || |||||||| || |||||||| | Sbjct 124 ACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAG 65 Query 20058 GTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||||||||||||| || || || ||||||||||| ||||| ||||| Sbjct 64 GTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 16 >seq929 Length=1222 Score = 320 bits (354), Expect = 5e-83 Identities = 423/572 (74%), Gaps = 15/572 (3%) Strand=Plus/Plus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 658 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 717 Query 19586 GCCACCATCTGC-TTCATTATT-GCATTCATTGCGGCTCCACCAGTTGACATTGATGGCA 19643 || || |||| || |||||| || |||||||| || || || || || |||||||| | Sbjct 718 GCAACT-TCTGTATTTATTATTAGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTA 776 Query 19644 TCCGCGAACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTC 19702 | || ||||| || || || | | || ||||| |||||||| || || || || ||| | Sbjct 777 TTCGTGAACCTGTTTCTGG-ATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATT 835 Query 19703 GTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCAC 19760 | || | | ||| || || || | ||||| |||||||| |||||||| ||| Sbjct 836 ATCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTG 893 Query 19761 TTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG 19820 ||||||||||| | |||||||| || || | | || | || | |||||| | ||| Sbjct 894 TTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTG 953 Query 19821 GCAT--CTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCC 19878 | | || |||| | ||||| || |||||||||||||| | || || || ||| | || Sbjct 954 GTGTAGCT-TGCT-ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCC 1011 Query 19879 TTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCT 19937 ||||||| |||||| || || ||||| |||||||| || |||| || ||||| | ||| Sbjct 1012 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCT 1070 Query 19938 ACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCA 19997 |||| ||||||| || ||||| || || | ||||||| | || ||||| ||||| |||| Sbjct 1071 ACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCA 1130 Query 19998 ACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTG 20057 ||| |||| | ||||||||||| || || ||||| || |||||||| || |||||||| | Sbjct 1131 ACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAG 1190 Query 20058 GTGTGGCTGGTGTATTCGGTGGGTCACTATTC 20089 |||||||||||||||| || || || |||||| Sbjct 1191 GTGTGGCTGGTGTATTTGGCGGTTCCCTATTC 1222 >seq2704 Length=1012 Score = 120 bits (132), Expect = 9e-23 Identities = 191/267 (72%), Gaps = 8/267 (3%) Strand=Plus/Plus Query 19526 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 19585 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 699 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 758 Query 19586 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCAT 19644 || || |||| || |||||||| |||||||| || || || || || |||||||| || Sbjct 759 GCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTAT 817 Query 19645 CCGCGAACCCGTATCCGGTAGCCTT-CTTTATGGAAACAACATCATATCGGGAGCCGTCG 19703 || ||||| || || || | | || ||||| |||||||| || || || || ||| | Sbjct 818 TCGTGAACCTGTTTCTGG-ATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTA 876 Query 19704 TTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACT 19761 | || | | ||| || || || | ||||| |||||||| |||||||| ||| | Sbjct 877 TCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGT 934 Query 19762 TGATGAATGGCTCTACAACGGGGGACC 19788 |||||||||| | |||||||| || || Sbjct 935 TGATGAATGGTTATACAACGGTGGCCC 961 >seq672 Length=1075 Score = 105 bits (116), Expect = 2e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 20387 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTG 20446 |||||||| ||| ||||||||||||| ||| |||| || |||||||| || | || || Sbjct 1067 GGTCGTGTAATTAATACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTT 1008 Query 20447 ATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||||||||||| ||||||||||| ||||| || ||||| || Sbjct 1007 ATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148823413141584