Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq3048 551 2e-152 seq2823 349 1e-91 seq838 307 3e-79 seq929 288 3e-73 seq2704 129 2e-25 seq672 113 1e-20 >seq3048 Length=155691 Score = 551 bits (610), Expect = 2e-152 Identities = 710/969 (73%), Gaps = 12/969 (1%) Strand=Plus/Minus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 1396 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 1337 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || || |||| || |||||||| |||||||| ||||| || || || |||||||| || Sbjct 1336 GCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTAT 1278 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || |||||||| ||||| | | || || |||||||| || || || || ||| | | Sbjct 1277 TCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTAT 1218 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 || | | ||| || || || | ||||| |||||||| |||||||| ||| || Sbjct 1217 CCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTT 1160 Query 28891 GATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGC 28950 ||||||||| | |||||||| || || | | || | || | |||||| | |||| Sbjct 1159 GATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGT 1100 Query 28951 GT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGT 29008 || || |||| | ||||| || |||||||||||||| | || || || ||| | || | Sbjct 1099 GTAGCT-TGCT-ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTT 1042 Query 29009 GGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACC 29068 ||||| ||| ||||| |||||||| || ||||| || |||| |||||| | |||||| Sbjct 1041 GGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACC 982 Query 29069 CATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACT 29128 || | |||||||| ||| |||| |||||| | || || || || || ||||||| Sbjct 981 CAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACT 922 Query 29129 ACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCG 29188 |||| | || |||||||| || || ||||| || |||||||| || |||||||| || | Sbjct 921 TCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTG 862 Query 29189 TTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCT 29248 | ||||| || || || || || ||||| ||||| ||||| ||||| | || || || | Sbjct 861 TGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTC-T 803 Query 29249 CGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAA 29307 | ||| | | || || || ||| | ||| || | ||||||| || || ||| Sbjct 802 AGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAA 743 Query 29308 GAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAA 29367 || ||||| || ||||| |||||||||||||| ||||| ||||| || |||||||||||| Sbjct 742 GAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAA 683 Query 29368 TATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTA 29427 |||||| |||||| ||| |||||| ||||||||||| | ||||| ||||| || ||| Sbjct 682 TATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTA 623 Query 29428 GGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAAC 29487 || || |||||| | || || || | || ||||| || || | || |||||||| Sbjct 622 GGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTTAAT 563 Query 29488 TTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTC 29547 || || || || | | || | | |||||||| |||||||||||||||||| || || Sbjct 562 TTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATTATC 503 Query 29548 AATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTT 29607 || |||||||| || || | ||||| |||||||| |||||||||||||| ||||| || Sbjct 502 AACCGCGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTA 443 Query 29608 GATCTGGCT 29616 || || ||| Sbjct 442 GACCTAGCT 434 >seq2823 Length=1025 Score = 349 bits (386), Expect = 1e-91 Identities = 414/556 (74%), Gaps = 4/556 (1%) Strand=Plus/Plus Query 29064 CTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTT 29123 ||||||| | |||||||| ||| |||| |||||| | || || || || || || Sbjct 1 CTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTT 60 Query 29124 CAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCC-ACATGC 29182 ||||| |||| | || |||||||| || || ||||| || |||||||| || | |||||| Sbjct 61 CAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGC 120 Query 29183 TGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCA 29242 | || || ||||| || || || || || ||||| ||||| ||||| ||||| | || | Sbjct 121 TAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAA 180 Query 29243 CGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTT 29301 | || | | ||| | | || || || ||| | ||| || | ||||||| || Sbjct 181 CCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 239 Query 29302 GGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATC 29361 || ||||| ||||| || ||||| |||||||||||||| ||||| ||||| || |||||| Sbjct 240 GGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 299 Query 29362 TTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCG 29421 |||||||||||| |||||| ||| |||||| ||||||||||| | ||||| ||||| Sbjct 300 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCT 359 Query 29422 GTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGT 29481 || ||||| || |||||| | || || || | || ||||| || || | || ||| Sbjct 360 GTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGT 419 Query 29482 TTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGAT 29541 ||||| || || || || | | || | | |||||||| |||||||||||||||||| Sbjct 420 TTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGAT 479 Query 29542 GTTCTCAATCGCG-CTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTT 29600 || |||| |||| |||| || || | ||||| |||||||| |||||||||||||| || Sbjct 480 ATTATCAACCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTT 539 Query 29601 CCCACTTGATCTGGCT 29616 ||| || || || ||| Sbjct 540 CCCTCTAGACCTAGCT 555 >seq838 Length=1002 Score = 307 bits (340), Expect = 3e-79 Identities = 426/587 (73%), Gaps = 11/587 (2%) Strand=Plus/Minus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 597 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 538 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || || |||| || |||||||| |||||||| ||||| || || || |||||||| || Sbjct 537 GCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTAT 479 Query 28773 CCGCG-AACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCG 28831 || | ||||||| ||||| | | || || |||||||| || || || || ||| | Sbjct 478 TCGTGTAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTA 419 Query 28832 TACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACT 28889 | || | | ||| || || || | ||||| |||||||| |||||||| ||| | Sbjct 418 TCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGT 361 Query 28890 TGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGG 28949 |||||||||| | |||||||| || || | | || | || | |||||| | |||| Sbjct 360 TGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 301 Query 28950 CGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCG 29007 || || |||| | ||||| || |||||||||||||| | || || || ||| | || Sbjct 300 TGTAGCT-TGCT-ATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCT 243 Query 29008 TGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTAC 29067 |||||| ||| ||||| |||||||| || ||||| || |||| |||||| | ||||| Sbjct 242 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAC 183 Query 29068 CCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAAC 29127 ||| | |||||||| ||| |||| |||||| | || || || || || |||||| Sbjct 182 CCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 123 Query 29128 TACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGC 29187 | |||| | || |||||||| || || ||||| || |||||||| || |||||||| || Sbjct 122 TTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGT 63 Query 29188 GTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 || ||||| || || || || || ||||| ||||| ||||| ||||| Sbjct 62 GTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 16 >seq929 Length=1222 Score = 288 bits (318), Expect = 3e-73 Identities = 411/569 (72%), Gaps = 11/569 (2%) Strand=Plus/Plus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 658 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 717 Query 28714 GCCACCATCTGC-TTCATTATT-GCATTCATTGCGGCACCACCAGTTGACATTGATGGCA 28771 || || |||| || |||||| || |||||||| ||||| || || || |||||||| | Sbjct 718 GCAACT-TCTGTATTTATTATTAGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTA 776 Query 28772 TCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCG 28831 | || |||||||| ||||| | | || || |||||||| || || || || ||| | Sbjct 777 TTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTA 836 Query 28832 TACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACT 28889 | || | | ||| || || || | ||||| |||||||| |||||||| ||| | Sbjct 837 TCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGT 894 Query 28890 TGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGG 28949 |||||||||| | |||||||| || || | | || | || | |||||| | |||| Sbjct 895 TGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG 954 Query 28950 CGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCG 29007 || || ||| || ||||| || |||||||||||||| | || || || ||| | || Sbjct 955 TGTAGCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCT 1012 Query 29008 TGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTAC 29067 |||||| ||| ||||| |||||||| || ||||| || |||| |||||| | ||||| Sbjct 1013 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAC 1072 Query 29068 CCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAAC 29127 ||| | |||||||| ||| |||| |||||| | || || || || || |||||| Sbjct 1073 CCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 1132 Query 29128 TACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGC 29187 | |||| | || |||||||| || || ||||| || |||||||| || |||||||| || Sbjct 1133 TTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGT 1192 Query 29188 GTTGCTGGAGTGTTCGGTGGCTCGCTATT 29216 || ||||| || || || || || ||||| Sbjct 1193 GTGGCTGGTGTATTTGGCGGTTCCCTATT 1221 >seq2704 Length=1012 Score = 129 bits (142), Expect = 2e-25 Identities = 191/266 (72%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | ||||||||||| |||| |||||||| ||||||| || | | | | Sbjct 699 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACC 758 Query 28714 GCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCAT 28772 || || |||| || |||||||| |||||||| ||||| || || || |||||||| || Sbjct 759 GCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTAT 817 Query 28773 CCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGT 28832 || |||||||| ||||| | | || || |||||||| || || || || ||| | | Sbjct 818 TCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTAT 877 Query 28833 ACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTT 28890 || | | ||| || || || | ||||| |||||||| |||||||| ||| || Sbjct 878 CCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTT 935 Query 28891 GATGAATGGCTCTACAACGGGGGACC 28916 ||||||||| | |||||||| || || Sbjct 936 GATGAATGGTTATACAACGGTGGCCC 961 >seq672 Length=1075 Score = 113 bits (124), Expect = 1e-20 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 29515 GGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTA 29574 |||||||| |||||||||||||||||| || |||| |||||||| || || | ||||| Sbjct 1067 GGTCGTGTAATTAATACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTT 1008 Query 29575 ATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 |||||||| |||||||||||||| ||||| || || || ||| Sbjct 1007 ATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGCT 966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146660291438608