Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq3048 616 4e-172 seq838 390 3e-104 seq929 370 3e-98 seq2823 367 4e-97 seq2704 163 8e-36 seq672 95.1 3e-15 >seq3048 Length=155691 Score = 616 bits (682), Expect = 4e-172 Identities = 733/983 (75%), Gaps = 12/983 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| | ||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 1417 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1358 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || |||||||| |||||||||||||| Sbjct 1357 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACC 1299 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || | | ||||| |||||||| Sbjct 1298 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAA 1239 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | | || | | ||| || || || | ||||| |||||| Sbjct 1238 TATTATTTCCGGTGCCATTATCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCA 1181 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTG 19020 || |||||||| ||| ||||||||||| | |||||||| || || | | || | Sbjct 1180 ATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAATT 1121 Query 19021 GTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGCT 19078 || | |||||| | |||| || || |||| | ||||| || |||||||||||||| | Sbjct 1120 GTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ATATGGGTCGTGAGTGGGAACTTAGTT 1063 Query 19079 ATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCT 19138 || || || ||||||||||||||| |||||| || |||||||||||||| || || Sbjct 1062 TCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTA 1003 Query 19139 CTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGG 19198 |||| || ||| | |||| ||| |||||||||| |||| |||| ||||||| | | Sbjct 1002 CTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAG 943 Query 19199 GTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGC 19258 | || |||||| ||||||| |||| |||||||||| ||||| || |||||||| |||| Sbjct 942 GAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGC 883 Query 19259 ACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGC 19318 |||| || |||||||| ||||| |||||||| || ||||| || ||||| ||||| |||| Sbjct 882 ACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGC 823 Query 19319 ACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAAC 19377 | ||||| | || || | || | ||| | | ||||| || ||| | | |||| || Sbjct 822 ATGGTTCTTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAAT 764 Query 19378 TATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTAT 19437 | || |||| || || ||||| ||||| || ||||| || || || |||||||| ||| Sbjct 763 GAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTAT 704 Query 19438 TTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTT 19497 ||||| || | || ||||| || || ||||||||| |||||| |||| ||||| Sbjct 703 TTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTC 644 Query 19498 TTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCA 19557 || |||||||||||||| || || || ||||| |||| | || | ||||| ||||| Sbjct 643 TTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCT 584 Query 19558 TTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATT 19617 |||||||| ||||| ||||| || || || || | |||| | | |||||||| ||| Sbjct 583 TTCAACTTAAATGGTTTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATT 524 Query 19618 GATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGT 19677 ||||||||||||| ||| |||| || ||||| || || | || || ||||| |||||| Sbjct 523 AATACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTTATGCATGAACGT 464 Query 19678 AATGCTCATAACTTCCCACTTGA 19700 ||||||||||| ||||| || || Sbjct 463 AATGCTCATAATTTCCCTCTAGA 441 >seq838 Length=1002 Score = 390 bits (432), Expect = 3e-104 Identities = 457/608 (75%), Gaps = 11/608 (2%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| | ||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 618 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 559 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || |||||||| |||||||||||||| Sbjct 558 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACC 500 Query 18843 TCCTGTAGACATTGATGGCATCCGCG-AGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 ||| ||||| |||||||| || || | | |||||| | || | | ||||| ||||||| Sbjct 499 TCCGGTAGATATTGATGGTATTCGTGTAACCTGTTTCTGGATCTTTACTTTACGGAAACA 440 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | | || | | ||| || || || | ||||| ||||| Sbjct 439 ATATTATTTCCGGTGCCATTATCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 382 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| ||| ||||||||||| | |||||||| || || | | || | Sbjct 381 AATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAAT 322 Query 19020 GGTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGC 19077 || | |||||| | |||| || || |||| | ||||| || |||||||||||||| Sbjct 321 TGTTCTACACTTCTTACTTGGTGTAGCT-TGCT-ATATGGGTCGTGAGTGGGAACTTAGT 264 Query 19078 TATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCC 19137 | || || || ||||||||||||||| |||||| || |||||||||||||| || || Sbjct 263 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCT 204 Query 19138 TCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTG 19197 |||| || ||| | |||| ||| |||||||||| |||| |||| ||||||| | Sbjct 203 ACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTA 144 Query 19198 GGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATG 19257 || || |||||| ||||||| |||| |||||||||| ||||| || |||||||| ||| Sbjct 143 GGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATG 84 Query 19258 CACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATG 19317 ||||| || |||||||| ||||| |||||||| || ||||| || ||||| ||||| ||| Sbjct 83 CACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATG 24 Query 19318 CACGGTTC 19325 || ||||| Sbjct 23 CATGGTTC 16 >seq929 Length=1222 Score = 370 bits (410), Expect = 3e-98 Identities = 442/590 (75%), Gaps = 11/590 (2%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| | ||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 637 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 696 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATT-GCCTTCATTGCTGCAC 18841 ||||| || | | | | || ||| | ||| || |||||| || ||||||||||||| Sbjct 697 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATTAGCTTTCATTGCTGCAC 755 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || || |||||| | || | | ||||| ||||||| Sbjct 756 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACA 815 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | | || | | ||| || || || | ||||| ||||| Sbjct 816 ATATTATTTCCGGTGCCATTATCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 873 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| |||||||| ||| ||||||||||| | |||||||| || || | | || | Sbjct 874 AATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCCTTATGAGCTAAT 933 Query 19020 GGTCTTCCACTTCCTCATTGGCGT--CTATGCTTACATGGGACGCGAGTGGGAACTTAGC 19077 || | |||||| | |||| || || ||| || ||||| || |||||||||||||| Sbjct 934 TGTTCTACACTTCTTACTTGGTGTAGCT-TGC-TATATGGGTCGTGAGTGGGAACTTAGT 991 Query 19078 TATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCC 19137 | || || || ||||||||||||||| |||||| || |||||||||||||| || || Sbjct 992 TTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCT 1051 Query 19138 TCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTG 19197 |||| || ||| | |||| ||| |||||||||| |||| |||| ||||||| | Sbjct 1052 ACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTA 1111 Query 19198 GGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATG 19257 || || |||||| ||||||| |||| |||||||||| ||||| || |||||||| ||| Sbjct 1112 GGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATG 1171 Query 19258 CACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 ||||| || |||||||| ||||| |||||||| || ||||| || ||||| Sbjct 1172 CACCCATTTCACATGCTAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATT 1221 >seq2823 Length=1025 Score = 367 bits (406), Expect = 4e-97 Identities = 414/549 (75%), Gaps = 4/549 (1%) Strand=Plus/Plus Query 19155 CTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTT 19214 ||| ||| |||||||||| |||| |||| ||||||| | || || |||||| || Sbjct 1 CTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTT 60 Query 19215 CAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCC-ACATGC 19273 ||||| |||| |||||||||| ||||| || |||||||| |||||||| || | |||||| Sbjct 61 CAACTTCATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCTACATGC 120 Query 19274 TCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTA 19333 | ||||| |||||||| || ||||| || ||||| ||||| ||||| ||||| | || | Sbjct 121 TAGGTGTGGCTGGTGTATTTGGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAA 180 Query 19334 CGTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTT 19392 | || | | ||| | | ||||| || ||| | | |||| || | || |||| || Sbjct 181 CCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 239 Query 19393 GGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATT 19452 || ||||| ||||| || ||||| || || || |||||||| |||||||| || | || Sbjct 240 GGTCAAGAGGAAGAAACCTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATC 299 Query 19453 TTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCT 19512 ||||| || || ||||||||| |||||| |||| ||||| || |||||||||||| Sbjct 300 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCT 359 Query 19513 GTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGC 19572 || || || || ||||| |||| | || | ||||| ||||| |||||||| ||||| Sbjct 360 GTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGT 419 Query 19573 TTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGAC 19632 ||||| || || || || | |||| | | |||||||| ||| ||||||||||||| Sbjct 420 TTTAATTTCAATCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGAT 479 Query 19633 ATTCTCAATCGTG-CTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTT 19691 ||| |||| || | |||| || || | || || ||||| ||||||||||||||||| || Sbjct 480 ATTATCAACCGCGACTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTT 539 Query 19692 CCCACTTGA 19700 ||| || || Sbjct 540 CCCTCTAGA 548 >seq2704 Length=1012 Score = 163 bits (180), Expect = 8e-36 Identities = 211/287 (74%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 |||||| | ||| ||||||| || || ||||||||||| || || |||||||| || Sbjct 678 TTTTGTAATTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 737 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || | | | | || ||| | ||| || |||||||| |||||||||||||| Sbjct 738 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCACC 796 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 ||| ||||| |||||||| || || || |||||| | || | | ||||| |||||||| Sbjct 797 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAACAA 856 Query 18903 CATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCA 18960 || || || || ||| | | || | | ||| || || || | ||||| |||||| Sbjct 857 TATTATTTCCGGTGCCATTATCCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCA 914 Query 18961 ATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 19007 || |||||||| ||| ||||||||||| | |||||||| || || Sbjct 915 ATATGGGAAGCGGCTTCTGTTGATGAATGGTTATACAACGGTGGCCC 961 >seq672 Length=1075 Score = 95.1 bits (104), Expect = 3e-15 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 |||||||| ||| ||||||||||||| ||| |||| || ||||| || || | || || Sbjct 1067 GGTCGTGTAATTAATACTTGGGCTGATATTATCAACCGCGCTAATCTTGGTATGGAAGTT 1008 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 ||||| ||||||||||||||||| ||||| || || Sbjct 1007 ATGCATGAACGTAATGCTCATAATTTCCCTCTAGA 973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141143691119184