Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 >seq6 Length=38222195 Score = 109 bits (120), Expect = 5e-19 Identities = 161/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 46761 CCATGCGTTCGC-AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCAC 46819 || ||||| ||| |||||||| ||||||||| |||| |||||||| || ||| || Sbjct 28139242 CCTTGCGT-CGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCT---CCGAAAC 28139187 Query 46820 GCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTT 46879 | || ||||| || ||||| ||||| || ||||| | || || ||||| || || Sbjct 28139186 TTTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTT 28139127 Query 46880 TGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGA 46939 ||| || |||| | |||| || | |||||||| ||||| ||| ||||| Sbjct 28139126 CTGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGA 28139067 Query 46940 GTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCT 46984 |||||||||||| || ||||| || ||| ||||| ||||| || Sbjct 28139066 GTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCT 28139022 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || |||||||||||| || ||| || || |||||||| || |||| ||| Sbjct 22063131 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 22063072 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | |||||||| ||||| ||||| |||||||| || || || || || | | | Sbjct 22063071 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 22063012 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || ||| | |||||| |||| || | || || || || || ||||| | || Sbjct 22063011 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 22062952 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 22062951 ATATCTGCAT 22062942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476593041113280