Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 7e-11 >seq3 Length=27879571 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || | |||||||| | ||||| | || || ||| Sbjct 13656679 CATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACAATCACCTTGGAGGTTGAAAGTTC 13656738 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || || | || || ||| ||| || |||||||| || || || || || Sbjct 13656739 AGATACAATTGATAATGTCAAGGCAAAGATTCAGGACAAAGAGGGCATTCCTCCAGACCA 13656798 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||||| | || ||||| || || |||| | | | | | || ||||| Sbjct 13656799 GCAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGATGGTCGCACTCTTGCGGACTACAA 13656858 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||| || ||||| || |||| || ||||| Sbjct 13656859 TATTCAGAAGGAATCAACTCTTCACTTGGTGTT 13656891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445077441903360