Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 338 9e-87 >seq6 Length=38222195 Score = 338 bits (374), Expect = 9e-87 Identities = 415/562 (74%), Gaps = 10/562 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||| ||| | |||||| |||| || | ||||||| || | |||| | | Sbjct 28139635 GAGCCGCTCCTGATGGCCAACCCGGACCGGTTCTGCATGTTCCCGATTCAATACCCGGAG 28139576 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || ||||||||||| || || |||||||||||||||||||| || Sbjct 28139575 ATCTGGGAGATGTAC-AAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAGGTCGATCT 28139517 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 || ||| | |||||||| | || | | || |||| || ||||||| || Sbjct 28139516 CGATCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGCGAGAAGCACTTCATCACTCA 28139457 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 |||||||||||| || ||||||| ||| |||||||| |||||| || ||||| | | Sbjct 28139456 CGTCCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTACTCGAGAATCTTGCCGGAAGGT 28139398 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||| |||||||| | | ||||| ||| || ||||| ||||||||||| || | Sbjct 28139397 TCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAGATCGCGATTG 28139338 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || | ||| ||||| |||| |||||| |||| ||| ||| || Sbjct 28139337 AGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGACTCGGACG 28139278 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| || ||||| || ||| ||||||| | || | || ||||||||| | | Sbjct 28139277 AGAAGTCCCGTCTCTTCCGGGCCGTCGACACCATCCCTTGCGTCGCGAAAAAGGCGCAGT 28139218 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCT 1456194 |||| |||| |||||| || ||| ||| ||||| || |||||| |||| | || Sbjct 28139217 GGGCCCTGAAATGGATC------GACGGCTCCGAAACTTTCGCGGAGCGGATCGTGGCCT 28139164 Query 1456195 TTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 | ||| |||| || || ||||| |||||||| || |||||||| || |||||||| || | Sbjct 28139163 TCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCTAAAAA 28139104 Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275 ||||||| | ||||| ||||| Sbjct 28139103 AGCGCGGGTTGATGCCGGGTCT 28139082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177517214797776