Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 seq6 116 5e-21 >seq1 Length=22681039 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | |||||| | |||| | |||| |||||| ||||| || || Sbjct 15714593 TCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCC 15714534 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||||||| ||||||||| || | || ||||| || || ||| Sbjct 15714533 ATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTGAACAGA 15714474 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||| || || ||| ||| | |||||| ||||| || |||||||| Sbjct 15714473 GACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGTATCATATAT 15714414 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| ||||| | ||| || |||||| Sbjct 15714413 GCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 15714371 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | |||||| | |||||||| || ||||||||||| | ||| | |||| | Sbjct 15714247 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCACCGCTGAGACATGAGATGG 15714188 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| ||| | ||||| ||||| || || ||||| | || || | ||| | | Sbjct 15714187 TATGTTTTGATAACAGATTCAATATCATCCTTGTGTATTCCAACAGCAACCCTCATTAGC 15714128 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||||||||| | ||||| || | | || || |||||||| | || ||| Sbjct 15714127 ATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAGA 15714068 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || || || ||||| |||| || |||||| | || ||||| || Sbjct 15714067 GTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 15714021 >seq6 Length=38222195 Score = 116 bits (128), Expect = 5e-21 Identities = 382/584 (65%), Gaps = 16/584 (3%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || || ||||| ||||||| || || ||||| || || || || Sbjct 28139024 GCACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 28139083 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| | || |||||||| ||||||||||| || ||| ||| ||| || |||| Sbjct 28139084 ACCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAAGA 28139142 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT--GTATCATTATG 39792 |||| ||||| || || || || || | | ||| || || || | | | | Sbjct 28139143 AGATCCCTTCCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGAGC--CGTC 28139200 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 ||||| ||| | ||||| | || || ||| || ||||| || || || | || Sbjct 28139201 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCG 28139260 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 |||||| || || || ||||| | || || || | | || || ||||| Sbjct 28139261 GAAGAGACGGGACTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 28139320 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || |||||||| |||||||| ||||| || ||||| || | || || | | Sbjct 28139321 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 28139380 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAA-ATTTTCATTCACTATTCCATCACTAGCGG 40031 || ||||| || | | ||||| ||| ||| || || || || || |||| Sbjct 28139381 CTGGACCTC-CTTCATGAACCTTCCGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCGG 28139439 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 | || || || | || || | || || | || || |||| || | | | ||||| Sbjct 28139440 CGAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGT 28139499 Query 40092 --CATTGATATCTTTTGAT--ATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 | || | ||||| | ||| || || || || ||||| ||||||||||| ||| Sbjct 28139500 GGCGCTG----GTCTTGATCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCC 28139555 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAAT 40191 || |||||||| | ||| || || | ||||| || || || || Sbjct 28139556 TTCTTGTACATCTCCCAGATCTCCGGGTATTGAATCGGGAACAT 28139599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686882628774720