Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq6 95.1 1e-14 seq3 93.3 4e-14 seq2 84.2 2e-11 seq5 82.4 6e-11 >seq1 Length=22681039 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 22555132 GCCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 22555191 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | || |||| ||||||||||| |||||| | ||||| ||||| || |||||||| Sbjct 22555192 GAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 22555251 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | ||||| | || || || Sbjct 22555252 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGGACTCCAC 22555311 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || ||||| || |||||||| ||||| ||||| Sbjct 22555312 CTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 22555359 >seq6 Length=38222195 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || ||||||||| || | |||| |||| |||||||| || |||||| | | Sbjct 22063131 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGA 22063072 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 |||||||||| ||||| || || | || || || || ||||||| || | | | Sbjct 22063071 TGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 22063012 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||||| || || || || ||||| || | || ||||| || |||||||| | Sbjct 22063011 CGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 22062952 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 22062951 ATATCTGCAT 22062942 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | || |||| || ||||| || ||| Sbjct 34520308 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTTCCG 34520367 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| || || || || | ||||| || || ||||||| || Sbjct 34520368 GCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 34520427 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || || ||||| | | || || || || || || | ||||| || || ||| Sbjct 34520428 ACGTTGTCGACGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGTT 34520487 Query 27231 TTCACAAAGATTTGCAT 27247 |||||||| |||||||| Sbjct 34520488 TTCACAAAAATTTGCAT 34520504 >seq3 Length=27879571 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || |||||||| ||||| || || | |||| | || || Sbjct 13656660 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 13656601 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| | ||| || || || || | |||||||||||| Sbjct 13656600 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 13656541 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | ||||| || | ||||| | ||| Sbjct 13656540 ATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTC 13656481 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||||||||| Sbjct 13656480 CCAGTGAGAGTCTTCACAAAGATTTGCAT 13656452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||||||||| |||||||| || |||| || |||| |||||||| || || Sbjct 13774424 GTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTTCGGC-CGTCCTCGAGCTGCTTGCC 13774366 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || || | || || || || || | ||||| || || |||||| || Sbjct 13774365 AGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTT 13774306 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | |||||| || || || |||| ||||| || || || Sbjct 13774305 GACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGT 13774246 Query 27230 TTTCACAAAGATTTGCATAGCTGCTAAA 27257 |||||||||||| ||||| ||| |||| Sbjct 13774245 TTTCACAAAGATCTGCAT--CTGTTAAA 13774220 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | ||||| || | || || || ||||||||||| ||||| | Sbjct 13657134 CCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTG-C 13657076 Query 27081 ATGTTGCGCTCG-TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | || || || ||||| ||||| || |||| | | ||| || || || || Sbjct 13657075 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGAGG 13657016 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| || || ||||| | |||| ||||| | | ||| || Sbjct 13657015 AATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCAC 13656956 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | |||||| || || || || |||||||||||||| Sbjct 13656955 TTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 13656908 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||||||||| | | || | | || || ||||| ||||| Sbjct 13842016 GTCGATTCCTTTTGAATATTGTAGTCAACAAGGGTGTGTCCATCCTCAAGCTGCTTACCA 13842075 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || | ||||| ||||| || | || || || ||| ||| ||| ||| Sbjct 13842076 GCAAAAATCAGCCTTTGTTGGTCCGGGGGGATGCCTTCCTTGTCGTGGATTTTGGCTTTG 13842135 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| || || || || | ||||| || ||||| Sbjct 13842136 ACATTATCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTC 13842195 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 13842196 TTGACGAAGATCTGCATA 13842213 >seq2 Length=33308843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || |||||||| || ||||| || || ||| ||| |||| || Sbjct 6939306 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTATTCAGCGAGTGTC-CGCCCGTCCTC 6939364 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | || || | ||| | ||||| || | ||||| || || Sbjct 6939365 AAGCTGCTTGCCAGCAAAGATCAGCCTTTGTCGGTCCGGGGGAATTCCCTCCTTGTCTTG 6939424 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | || | |||||| | | |||||| || || || || | || Sbjct 6939425 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTT 6939484 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||||||||||||| ||||| Sbjct 6939485 GCCTGTGAGGGTTTTCACAAAGATCTGCAT 6939514 >seq5 Length=29328693 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| | | | || |||| |||||||| || ||| Sbjct 19804400 GTCGACTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCG 19804341 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||||||||| || || | ||||| || || ||||||| ||| Sbjct 19804340 GCAAAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTG 19804281 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || | | ||||| || || || Sbjct 19804280 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTC 19804221 Query 27231 TTCACAAAGATTTGC 27245 ||||||||||| ||| Sbjct 19804220 TTCACAAAGATCTGC 19804206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424918614749376