Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 2e-13 >seq6 Length=38222195 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/339 (66%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTC 11538 ||| || ||||| | | ||||| || |||| |||||||| ||||| | | || Sbjct 16169328 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAA---CCACAATGATACCAGTGTTACCCTC 16169384 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||| || |||||||| |||||||| || Sbjct 16169385 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCTCC 16169444 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| |||| | | ||| || || |||||||| ||||||| || ||||| Sbjct 16169445 ---ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 16169501 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || ||| ||||| || | | ||| ||||| || || | ||||| ||||| Sbjct 16169502 GCAAGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACC 16169561 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||||| || ||||| | | | ||| || || || ||| | |||||| Sbjct 16169562 AACAAACATTTCAACAAACTCAGAACCTGAGATAGAGAAAAAAGGAACACCAGCTTCACC 16169621 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || || || || |||||||| || ||||| Sbjct 16169622 AGCAATTGCCTTTGCTAGCAGAGTCTTTCCAGTTCCTGG 16169660 Score = 82.4 bits (90), Expect = 1e-10 Identities = 136/196 (69%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| || |||||||| || || | || || |||||| ||||| ||||| | || Sbjct 28139039 GTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCC 28139098 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||| || | |||| | || |||||||| || ||||||||||| || ||||| || Sbjct 28139099 GCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCA 28139158 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || || | | || || ||||| | || | || | |||||||| || Sbjct 28139159 GGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGA---GCCGTCGATCCATTTCAGGGC 28139215 Query 122850 CCATTTCGCCTTCTTC 122865 ||| | |||||| ||| Sbjct 28139216 CCACTGCGCCTTTTTC 28139231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628008071980800