Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 134 2e-26 >seq6 Length=38222195 Score = 134 bits (148), Expect = 2e-26 Identities = 348/521 (67%), Gaps = 21/521 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || |||||||| | |||||| ||||| || |||||||| | | || || |||||| Sbjct 28138740 TACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCATC 28138799 Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCAC-TCCAATCTGTTTGAGGAGA 129844 ||||||||||||||| | | || || | || ||| | | || || Sbjct 28138800 CAATCAAATGGGTTCTGCACATCATACAGTTTCC---CATATCCCAACGCACCCAGCAGC 28138856 Query 129845 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTA 129904 | ||| | |||| |||| ||||||| | |||| || |||||| || | | | Sbjct 28138857 CTATCAGCGACGAACTCGATGTACTGACCCATCAGATCACCGTTCATCCCAACTAAGGCG 28138916 Query 129905 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG 129964 || || | |||||| ||| |||| ||||||| ||||| || || | ||||||||| | Sbjct 28138917 CACGGTAACGCGTCGCAGACGAACTCCTTCTCTATGTCAACCGCGTTCCGCACGATTGAC 28138976 Query 129965 TGAATGGTCTCC---GTGCCAGGTCTATT--GCGCAAAGTCTTGAAGAGTTCCACGGCAA 130019 | | | |||| ||| || | || | | | | | || || |||| | | Sbjct 28138977 TTCACGCGCTCCTCGGTG--AGCTTCATCCGGAGGAGGGAGTAGAGAAGG--CACG-CGA 28139031 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || |||||| || || || || ||||| | || ||||||||| |||||| |||| Sbjct 28139032 AGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCA 28139091 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 | | || ||||| || | ||| || ||||| || || || |||||||||||||| | Sbjct 28139092 TCAACCCGCGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTT 28139151 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGAGCGGGACTTTGTATCAAACCAC 130198 |||| || ||||| || | || ||||| || |||| ||| | || | ||| Sbjct 28139152 CCACGCAGGCGAAGGCCACGATCCGCTCCGCGAAAGTTTCGGAGC----CGTCGATCCAT 28139207 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGT 130239 |||| |||||||||||||||||| ||| || |||| ||| Sbjct 28139208 TTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGT 28139248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618411637618880