Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 123 3e-23 seq2 104 3e-17 >seq6 Length=38222195 Score = 123 bits (136), Expect = 3e-23 Identities = 308/462 (67%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || ||||| | | || || || || | |||| ||||| || | | ||||| Sbjct 16169328 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 16169387 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| || |||| || ||||| | ||||||||| || Sbjct 16169388 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 16169444 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | ||| ||| || |||||||| ||||||| || || ||||| Sbjct 16169445 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 16169504 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 ||| ||||| ||| |||| ||| ||||| || || || || || |||||| Sbjct 16169505 AGGTGCGTTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCA 16169562 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 |||||||| || ||||| | | | | | || | || || || ||| || |||||| Sbjct 16169563 ACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACC 16169621 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || || || |||||||| || || ||||| || | || || | || Sbjct 16169622 AGCAATTGCCTTTGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCC 16169681 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | ||||| || ||| || | |||||||||| | ||| | || ||||| | Sbjct 16169682 TTTAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCAC 16169741 Query 9970 TTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||| | || || | ||||| | || | ||| ||||||| Sbjct 16169742 TTCCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATC 16169783 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || ||||| || | || || || || || || || ||||||||||| || |||| Sbjct 28139185 TTCGCGGAGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTC 28139126 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | |||||| || ||||| || | ||||| ||||| |||||| |||||| Sbjct 28139125 TGCGCGATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAG 28139066 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 | ||||| || || || || |||||| Sbjct 28139065 TTGATCTCGCGAGATGAAGGCCTCCAC 28139039 >seq2 Length=33308843 Score = 104 bits (114), Expect = 3e-17 Identities = 249/373 (67%), Gaps = 8/373 (2%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| || |||||||| ||||| | || |||||||| || |||| |||||||| | Sbjct 22856932 AAACCCGTCCATCTCCGTCAATAACTGATTAATAGTCTGCTCCCTCTCATCATTTCCA-- 22856989 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || || | | ||| | || |||||||||||||||||||| || || ||| Sbjct 22856990 CCTCCCATCCCCGCCCCCCTCTGCCTCCCAACGGCATCAATCTCATCAATAAACACAATG 22857049 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || || ||||| || || ||||| | |||| || | | || ||||| | Sbjct 22857050 CAGGG--CGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTCACTCTCGACGCTCCCACTC 22857107 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| ||||||||| | || |||| ||| || ||| || || |||| Sbjct 22857108 CCACAAACAGCTCCACAAACTCTGACGCGGCACACGAGAAGAACGGCGTGCCAGCCTCAC 22857167 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | |||| || || || || || ||||| || ||||| || ||| | || || | Sbjct 22857168 CAGCAACCGCACGAGCCAGCAGGGTCTTTCCGGTACCGGGAGGGCCCACAAGCAGACACC 22857227 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 || |||||||| || || || ||| | ||||| | ||| | |||||||||| Sbjct 22857228 CTTTGGGAATCTTAGCTCCCAAGGCAGTGTACTTATCAGGATTCTTCAAGAAATCCACAA 22857287 Query 9969 TTTCTTCCAATTC 9981 || | ||| || Sbjct 22857288 CCTCCTGCAACTC 22857300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583238577763520