Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 >seq6 Length=38222195 Score = 150 bits (166), Expect = 2e-31 Identities = 367/548 (67%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 59574 TACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAG 59633 |||||||| | |||| |||| ||||| || | || |||||| ||| ||||||| Sbjct 28139584 TACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACCGCCGAGGAG 28139525 Query 59634 ATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTC 59693 | || |||| ||||| | | ||||| | || | || |||| |||| ||| Sbjct 28139524 GTCGATCTCGATCAAGACCAGCGCCACTGGGAAACCCTAACCCCCGGCGAGAAGCACTTC 28139465 Query 59694 ATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGAC 59753 |||| ||||| ||||||||||| || || || || || | || ||| | | | Sbjct 28139464 ATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTACTCGAGAATCTTGCC 28139405 Query 59754 ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TC 59812 | || ||||| |||||| | | ||||| || | ||||||| | ||| || Sbjct 28139404 GGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGCCTTCTACGGCTTCCAGATC 28139345 Query 59813 GTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGA 59872 | | ||| ||||||||||||| |||| ||| | |||| | | |||| || Sbjct 28139344 GCG-ATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCAAAGA 28139286 Query 59873 TCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAA 59931 |||| |||||| | |||| ||||| ||| | || || |||| || || ||| Sbjct 28139285 CTCGGACGAGAAGTCCCGTCTCTTCCGGGCCGTCGACACCATCCCTTGC-GTCGCGAAAA 28139227 Query 59932 AAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATA 59990 | || | |||||| || | ||||| || || | | | || || | || || | Sbjct 28139226 AGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCC-GAAACTTTCGCGGAGCGGATCGTG 28139168 Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || || || ||||||||||| ||||||||||| || ||||| || || || ||||| Sbjct 28139167 GCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGAAGCTTCTGCGCGATATTTTGGCTA 28139108 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 |||||||| || | |||||||| |||| ||||| |||||| |||| || || || || Sbjct 28139107 AAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAA 28139048 Query 60111 GGCCTCCA 60118 |||||||| Sbjct 28139047 GGCCTCCA 28139040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548503901205120