Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 109 6e-19 seq3 87.8 2e-12 seq1 86.0 7e-12 seq2 82.4 8e-11 >seq6 Length=38222195 Score = 109 bits (120), Expect = 6e-19 Identities = 352/532 (66%), Gaps = 22/532 (4%) Strand=Plus/Plus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||||| ||||| || ||||| || | || || ||||| | || ||||| Sbjct 28139045 GCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCCGGCATCAACCCGCGCTT 28139104 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 || | |||||| || || |||||| || ||||||||| ||||| || || || || Sbjct 28139105 TTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAGATCCCTTCCACGCAGGCGAA 28139164 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTC 74944 ||| || | || | |||||| | | ||||| ||| ||||| || | ||||| | Sbjct 28139165 GGCCACGATCCGCTCCGCGAAAGTT---TCGGAGCCGTCGATCCATTTCAGGGCCCACTG 28139221 Query 74945 AGC--TTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCT 75002 || |||||| ||| ||||| || |||| || ||||||| | | |||||| Sbjct 28139222 CGCCTTTTTCG--CGACGCAAGGGATGGTGTCGACGGCCCGGAAGAGACGGGACTTCTCG 28139279 Query 75003 TCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCG 75062 || | || |||| | | || | | || |||| |||| || || || ||| Sbjct 28139280 TCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCA 28139339 Query 75063 TTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAA 75119 | ||| |||| | ||||||| | |||||||| | | ||| || ||||| || | Sbjct 28139340 AT-CGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGGACCTCCTTCATG-A 28139397 Query 75120 AAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACC 75179 | ||| | | | |||||| | ||||||||||| ||||||||||| || || || || Sbjct 28139398 ACCTTC-CGGCAAGATTCTCGAGTACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACG 28139456 Query 75180 ATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCC 75239 |||| ||||| ||| || || || | ||||| | | |||| | Sbjct 28139457 TGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCGCTGGTCTTGATCG 28139516 Query 75240 AAATCAATCTCCTCGACCGTCCAGAA--ACTCCCAATC-GCCTTTTTGTACA 75288 | ||| | ||||||| | |||||||| || || || ||||| ||||||| Sbjct 28139517 AGATCGACCTCCTCGGCGGTCCAGAACGACGCC---TCGGCCTTCTTGTACA 28139565 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 10978532 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 10978591 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 10978592 TGAGCTATGAAAGC 10978605 >seq3 Length=27879571 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3666471 CTGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 3666412 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 3666411 CTGAGCTATGAAAGC 3666397 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 17531896 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 17531837 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 17531836 TGAGCTATGAAAGC 17531823 >seq1 Length=22681039 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 14528409 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14528468 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 14528469 TGAGCTATGAAAGC 14528482 >seq2 Length=33308843 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 31064774 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 31064715 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 31064714 CTGAGCTACGAGAGC 31064700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195151070400