Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 seq2 98.7 7e-16 >seq3 Length=27879571 Score = 107 bits (118), Expect = 1e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| || ||||||||||| || ||| | || || |||||| | Sbjct 13774683 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 13774742 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| || ||| ||| || ||||| || ||| |||| || Sbjct 13774743 TGATACAATTGACAAT--GTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGAT 13774800 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| ||||| |||| | | | |||| | || || Sbjct 13774801 CAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTG-CAGACTA 13774859 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| || || ||||| |||||| | ||| ||||||| || Sbjct 13774860 CAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGTCTGCGTGGTGG 13774910 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| ||| | || |||||| |||||| | || || |||||| | Sbjct 13774911 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 13774970 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| ||| || ||||||||||| |||| || Sbjct 13774971 AGACACAATTGATAAT--GTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGAC 13775028 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| ||||| || | || || | | | || | |||||| Sbjct 13775029 CAGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTAC 13775088 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| ||| |||||||||| | ||| | ||||| || Sbjct 13775089 AACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 13775138 >seq2 Length=33308843 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| || || ||||||||||| || || | || || |||||| | Sbjct 6939060 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCTTGGAGGTGGAAAGCTC 6939001 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || || ||||| ||||| |||||| ||||| || ||| | || || Sbjct 6939000 CGATACAATTGACAAT--GTCAAGGCAAAAATCCAGGACAAGGAGGGTATCCCCCCAGAT 6938943 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| ||||| |||| | | | |||| | || || Sbjct 6938942 CAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTG-CAGACTA 6938884 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| || || ||||| |||||| | ||| ||||||| || Sbjct 6938883 CAACATTCAAAAGGAATCTACCTTGCACTTGGTTCTCCGTCTGCGTGGTGG 6938833 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||||||||| ||| | || |||||| ||||| | || || |||||| | Sbjct 6938832 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 6938773 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||| | ||||| ||| || ||||||||||| |||| Sbjct 6938772 AGAC-----ACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCA 6938718 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || ||||| ||||| || | || |||| | | || | ||| Sbjct 6938717 GACCAGCAGAGGCTTATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGAT 6938658 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || |||||| ||| |||||||||| | ||| | ||||| || Sbjct 6938657 TACAACATTCAGAAAGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 6938605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355849180601496