Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq1 102 7e-17 seq4 89.7 4e-13 seq2 87.8 2e-12 >seq3 Length=27879571 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || || || || ||||| ||||| ||||| | || || Sbjct 183762 CACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTTCGGCCATCCTC 183703 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| ||||| || |||||||||||||| | ||| | | ||| |||||| | Sbjct 183702 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCC-T 183644 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || | | | | | ||| | | | || || |||||||| || | |||||| | | Sbjct 183643 GAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCT 183584 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || || || ||||| || || |||||||||| Sbjct 183583 TGCCGGTGAGGGTTTTCACGAAAATTTGCATCT 183551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || || || ||||| || || ||||| || || | Sbjct 13656894 CGCAACACCAAGTGAAGAGTTGATTCCTTCTGAATATTGTAGTCCGCAAGAGTGCGACCA 13656835 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || |||||||| || ||||| || || | ||||||||| | || | || ||||||| Sbjct 13656834 TCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCTTTG 13656775 Query 39190 TCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACT--CCACGTCCACCGTG 39246 ||| ||| | | || |||| | | | ||||| | ||| | || |||| ||| Sbjct 13656774 TCC-TGAATCTTTGCCTTGACATTATCAATTGTATC--TGAACTTTCAACCTCCAAGGTG 13656718 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| || || || || |||||||||||||| Sbjct 13656717 ATTGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 13656680 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||||||||| ||||| ||||| || || || || | || || Sbjct 13774665 CACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGCGTACGGCCATCCTC 13774606 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| | Sbjct 13774605 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCC-T 13774547 Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || | | || |||| | | | || || ||| ||| || |||| ||||| Sbjct 13774546 GAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCT---CTCAACCTCCAATGTGATGG 13774490 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||| ||||| Sbjct 13774489 TCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 13774456 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || || || || || || ||||| ||||| || | | Sbjct 13841542 CGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCTGCAAGAGTGTGACCA 13841601 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || |||||||| || ||||| || || | ||||||||| | || | || ||| ||| Sbjct 13841602 TCCTCTAGCTGTTTCCCTGCAAAAATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTG 13841661 Query 39190 TCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| | | || |||| | | | |||||| ||| || |||| ||||| Sbjct 13841662 TCC-TGAATCTTTGCCTTGACATTATCAATTGTATCGGAACTCTCAACCTCCAAAGTGAT 13841720 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || ||||||||||||||||| Sbjct 13841721 TGTCTTACCGGTGAGGGTCTTAACAAAGATTTGCAT 13841756 >seq1 Length=22681039 Score = 102 bits (112), Expect = 7e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 22555144 GCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCC 22555203 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || |||||||| || || || || || ||||||||||| | || | || ||| || Sbjct 22555204 GTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 22555263 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || || | | | | || ||| |||||||| |||| |||||| Sbjct 22555264 GTCTTGGATCTTGGCCTTCACATTATCGATGGTGTCGGAGGACTCCACCTCCAACGTGAT 22555323 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 | || ||||| || ||||| || ||||| |||||||| |||||| Sbjct 22555324 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTGACGCCG 22555369 >seq4 Length=23292877 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || |||| || ||||| ||||| || || Sbjct 18773385 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 18773326 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || ||| |||||| ||| || |||| ||| Sbjct 18773325 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 18773267 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || ||||| || ||||| | Sbjct 18773266 TGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTTCCCCGTTAGGGTTTTCA 18773207 Query 39272 CAAAGATTTGCAT 39284 | ||||| ||||| Sbjct 18773206 CGAAGATCTGCAT 18773194 >seq2 Length=33308843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| ||||| ||||| ||||||||||| || || | || || Sbjct 6939078 CACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTC 6939137 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| Sbjct 6939138 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCCTTGTCCTG 6939197 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||||| ||| || | || ||||| | || Sbjct 6939198 GATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACCT-CAATGTGATGGTCTT 6939256 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| ||||| Sbjct 6939257 CCCTGTGAGAGTCTTAACAAAGATCTGCAT 6939286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429529643454824