Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq4 102 6e-17 seq3 102 6e-17 seq2 98.7 7e-16 >seq6 Length=38222195 Score = 104 bits (114), Expect = 2e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| ||||| || || ||||||||||| || || | Sbjct 22062939 AAGATGCAGATATTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTGGAGAGC 22062998 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| ||||| | || || || Sbjct 22062999 AGCGACACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAAGGCATCCCTCCTGA 22063057 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || ||||| || || || || |||| ||||| || | ||| || Sbjct 22063058 TCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCTTGGCCGACTA 22063117 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 22063118 CAACATCCAGAAAG 22063131 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || ||||| |||||||||||||| || || | | Sbjct 34538179 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCC 34538120 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAA-AGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| ||||| | || |||||||| Sbjct 34538119 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGGAAGGGATCCCCCCAGATCA 34538060 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || ||||| || || || || |||| | || || | |||||||| Sbjct 34538059 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGGACCTTGGCTGATTACAA 34538000 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || | ||||| || Sbjct 34537999 CATCCAGAAGGAGTCAACCCTCCATTTGGT 34537970 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || |||||||||||||| || || | | Sbjct 34520276 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATCACTCTCGAGGTCGAGAGCTCT 34520217 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| || || | || || || || Sbjct 34520216 GATACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 34520157 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || ||||| || || |||| || | || ||||| | ||||||||| Sbjct 34520156 CAGAGGTTGATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGGCCGATTACAAT 34520097 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || |||||||| | ||||| || Sbjct 34520096 ATCCAGAAGGAGTCCACCCTCCATTTGGT 34520068 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || || ||||| | || || ||||||||| | || || |||||||| || ||| ||||| Sbjct 19322131 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 19322072 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | | | ||| | | ||||||||||| ||||| ||||| || | || |||||||| Sbjct 19322071 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 19322012 Query 23824 AGGTTGCGAGGAGGA 23838 ||| || | || ||| Sbjct 19322011 AGGCTGAGGGGTGGA 19321997 >seq4 Length=23292877 Score = 102 bits (112), Expect = 6e-17 Identities = 175/250 (70%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| |||||||| ||||| || || || || || |||||| | || || || Sbjct 15563499 AATATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGT 15563440 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | ||| | || | | ||||||||||| | || ||||| Sbjct 15563439 AGTGATACCATCGACAATGTCAAAGCCAAGA-TCCAGGACAAAGAAGGCATCCCTCCAGA 15563381 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||| | | || ||||| ||||| ||||||||||| | | ||| | | ||||| Sbjct 15563380 TCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGATTA 15563321 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAGT 23846 |||||| ||||| ||||| || | || | || || ||| | | |||||| | || Sbjct 15563320 CAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTCAGGGGAGGAAC-TATGT 15563262 Query 23847 TAAAGATGAA 23856 | |||||||| Sbjct 15563261 TCAAGATGAA 15563252 >seq3 Length=27879571 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| ||||| ||||| | | Sbjct 13774228 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 13774287 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | ||| || ||||| || || | || ||||| || Sbjct 13774288 GACACTATTGACAATGTCAAGGC-AAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 13774346 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| ||||| || || || |||| || || | | || ||||| Sbjct 13774347 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAA 13774406 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||||||||| Sbjct 13774407 CATTCAAAAAGAGTCCAC 13774424 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||||||||| || || || ||||| || || || || || | Sbjct 183553 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 183612 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || ||| ||||| || || | || || || || Sbjct 183613 GACACCATTGACAACGTTAAGGC-CAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCA 183671 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| ||||| || || || || | || || | | |||||||| Sbjct 183672 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTGCTGATTACAA 183731 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || | ||||| || Sbjct 183732 CATCCAGAAGGAGTCGACCCTCCATTTGGT 183761 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || ||||| | || ||||| | | Sbjct 13774456 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAGACCATCACATTGGAGGTTGAGAGCTCT 13774515 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | || ||||| || || | || |||||||| Sbjct 13774516 GACACAATCGATAATGTCAAGGCAAAGA-TTCAGGACAAGGAGGGCATCCCCCCAGATCA 13774574 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||||||||| || || || | || || | | |||||||| Sbjct 13774575 GCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGTACGCTCGCAGATTACAA 13774634 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||||||||| Sbjct 13774635 TATCCAAAAAGAGTCCAC 13774652 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || ||||| || ||||| || || | || ||||| | Sbjct 13656452 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 13656511 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| ||| || ||||| ||| | || ||||| || Sbjct 13656512 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 13656571 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || || || | ||||| | | ||||||||| Sbjct 13656572 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 13656631 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| | |||||||| Sbjct 13656632 ATTCAAAAGGAGTCCACCCTTCATTTAGT 13656660 >seq2 Length=33308843 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| || || ||||| | | Sbjct 6939514 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 6939455 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | ||| |||| | | ||||| || || | || || || | Sbjct 6939454 GACACTATTGACAATGTCAAAGCAAAGA-TCCAAGACAAGGAGGGAATTCCCCCGGACCG 6939396 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || || |||| || || | | || ||||| Sbjct 6939395 ACAAAGGCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGGCGGACACTCGCTGAATACAA 6939336 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| |||||||||||||| | || || ||| Sbjct 6939335 CATCCAAAAAGAGTCCACTCTCCACTTGGTT 6939305 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| || ||||| || || || ||||| | || ||||| | Sbjct 6939286 ATGCAGATCTTTGTTAAGACTCTCACAGGGAAGACCATCACATT-GAGGTTGAGAGTTCT 6939228 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || |||| | | ||||| || || |||| |||||||| Sbjct 6939227 GATACAATCGATAATGTCAAGGCAAAGA-TCCAGGACAAGGAGGGCATACCCCCAGATCA 6939169 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||||||||| || || || | ||||| | | ||||||||| Sbjct 6939168 GCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGATTACAA 6939109 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| ||||| || Sbjct 6939108 TATCCAAAAGGAGTCTAC 6939091 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || || || | || || ||||| || ||| | ||||| || | | Sbjct 6938832 AATGCAAATTTTTGTGAAGACTTTGACCGGGAAAACCATTACTTTGGAAGTGGAAAGCTC 6938773 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || ||| ||| ||||||||||| | || ||||| || Sbjct 6938772 AGACACAATTGATAACGTCAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 6938713 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || || |||| | || | | |||||||| Sbjct 6938712 GCAGAGGCTTATCTTTGCAGGAAAGCAGCTTGAGGACGGCAGGACACTGGCAGATTACAA 6938653 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| || | ||||| || Sbjct 6938652 CATTCAGAAAGAGTCGACTCTGCATTTGGT 6938623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997043788384