Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq4 89.7 4e-13 seq3 86.0 5e-12 >seq2 Length=33308843 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||| ||| || ||||| ||||| |||||||| |||| || || || || Sbjct 6938622 CACCAAATGCAGAGTCGACTCTTTCTGAATGTTGTAATCTGCCAGTGTCCTGCCGTCCTC 6938681 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | || || || ||| | |||||||| || |||||| ||| | |||||||||||| Sbjct 6938682 AAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 6938741 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| ||| || || | | | || |||| | | || ||| | ||||| ||| Sbjct 6938742 AATCTTTGCCTTGACGTTATCAATTGTGTCTGAG--CTTTCCACTTCCAAAGTAATGGTT 6938799 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| || || | ||||||||||||| Sbjct 6938800 TTCCCGGTCAAAGTCTTCACAAAAATTTGCATT 6938832 >seq4 Length=23292877 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || ||||||| ||| | ||| || || ||||| || |||||||| || | |||| || | Sbjct 15563282 CTCAACACCAGGTGAAGAGTCGACTCCTTTTGGATGTTGTAATCCGCAAGAGTTCTGCCA 15563341 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||||| ||| ||||| ||| | || || || ||||| ||| || | |||||||||| Sbjct 15563342 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCTGGAGGGATGCCTTCTTTG 15563401 Query 101144 TC 101145 || Sbjct 15563402 TC 15563403 >seq3 Length=27879571 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||||| |||| |||||| || || || || |||||||| |||| || | ||| || Sbjct 13775121 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTC 13775062 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 | || || || ||| | || ||||| || |||||| ||| | |||||||||||| Sbjct 13775061 AAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 13775002 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||| ||| || |||| | | || |||| | | || ||| | ||||||||| Sbjct 13775001 AATCTTTGCCTTGACATTATCAATTGTGTCTGAG--CTTTCCACTTCCAAAGTAATAGTT 13774944 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATT 101239 || || ||||| || || | ||| ||||||||| Sbjct 13774943 TTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 13774911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409645582125432