Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 >seq1 Length=22681039 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | ||| || | |||| |||||| || ||| ||||| || || Sbjct 15714592 CCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCCA 15714533 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||||||| ||||||||| ||| | || ||||| || || || Sbjct 15714532 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTGAACAGAG 15714473 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||| || || || || | ||| || ||||| ||||| || || Sbjct 15714472 ACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGTATCATATATG 15714413 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| ||||| | ||| || |||||| Sbjct 15714412 CCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 15714371 Score = 100 bits (110), Expect = 4e-16 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| |||| |||||| |||||||| || ||||| || |||| || Sbjct 15715094 CTCTCTTTCATAACGAGTGTATAGCTCTTCAAATTTTTCACCCCAGCAGTCTGCCAACCC 15715035 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || | ||||| || || | |||||||| || |||| | | || ||||| |||||| | Sbjct 15715034 TGGAGACTCATTAGGACAAAATAATGACCAATCTCCAT-TGCTTTCAACTCTTTTCATGA 15714976 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||| | ||| |||||| ||| ||||| || | ||| | ||||| Sbjct 15714975 ACAGATCAGGCACCCAAAGAGCATAAAAAAGATCACGAGCTCTGTTCTCTTC 15714924 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| | |||||| | || ||||| ||||| || ||||| | ||| | |||| | Sbjct 15714247 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCACCGCTGAGACATGAGATGG 15714188 Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||| | ||||| || || | ||| || ||||| || || || | ||| | Sbjct 15714187 TATGTTTTGATAACAGATTCAATATCATCCTTG-TGTATTCCAACAGCAACCCTCATTAG 15714129 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 |||||||||||| || || || ||| | | || || | |||||| | || | Sbjct 15714128 CATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAG 15714069 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| || |||||||| |||| || |||||| | || ||||| || Sbjct 15714068 AGTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 15714021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694642333118720