Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20vesca_20subsp._20vesca_20[refseq_20GCF_5F000184155.1_2020 11-02-24] 3,048 sequences; 214,373,013 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1 140 5e-28 >seq1 Length=22681039 Score = 140 bits (154), Expect = 5e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||| | |||| |||||| || ||| ||||| ||||| Sbjct 15714592 CCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCCA 15714533 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| ||||||||| ||| |||||||| || || ||| Sbjct 15714532 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTGAACAGAG 15714473 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || || ||| ||| | |||||| ||||| || ||||| ||| Sbjct 15714472 ACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAGGTATCATATATG 15714413 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| ||||| | ||| || |||||| Sbjct 15714412 CCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 15714371 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| | |||||| | |||||||| |||||||||||||| | ||| | |||| | Sbjct 15714247 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCACCGCTGAGACATGAGATGG 15714188 Query 77054 TATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||||| | ||| ||||| | ||| || ||||| ||||| || | ||| | Sbjct 15714187 TATGTTTTGATAACAGATTCAATATCATCCTTG-TGTATTCCAACAGCAACCCTCATTAG 15714129 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 |||||||||||| | |||||| ||| | | || || | |||||| | || | Sbjct 15714128 CATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAG 15714069 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||| || |||||||| |||| || |||||| | || ||||| || Sbjct 15714068 AGTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 15714021 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| | || |||| | |||||||| || ||||| || |||| || Sbjct 15715094 CTCTCTTTCATAACGAGTGTATAGCTCTTCAAATTTTTCACCCCAGCAGTCTGCCAACCC 15715035 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| | ||||| ||||| | |||||||| || |||| | | || ||| | |||||| | Sbjct 15715034 TGGAGACTCATTAGGACAAAATAATGACCAATCTCCAT-TGCTTTCAACTCTTTTCATGA 15714976 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT 76660 | |||||||| | ||| |||||| ||| ||||| || | ||| ||||| Sbjct 15714975 ACAGATCAGGCACCCAAAGAGCATAAAAAAGATCACGAGCTCT--GTTCT 15714928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712907237199360