Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq51887 86.0 5e-12
seq25161 86.0 5e-12
seq581596 84.2 2e-11
seq42417 84.2 2e-11
seq592805 82.4 6e-11
>seq51887
Length=16442
Score = 86.0 bits (94), Expect = 5e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| ||||| | || |||||||| ||| | || ||||| || || |||||||||
Sbjct 8377 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 8318
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247
||| | |||| | || |||||||| || |||||||| || ||||||||| | || |||
Sbjct 8317 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 8258
>seq25161
Length=2200
Score = 86.0 bits (94), Expect = 5e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207
|||||| || || || |||||||| |||||||| | || ||| | || | |||||
Sbjct 674 AGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGA 733
Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244
||||||||| |||||||| |||||||||||| |||||
Sbjct 734 TTACAATATCCAAAAGGAGTCTACTCTTCACCTGGTG 770
>seq581596
Length=910
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|| || || ||| | ||| |||||| || || || |||||||| || ||||| |||||
Sbjct 552 GACAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAG 493
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243
||| | |||| | || |||||||| |||||||||||||| || | ||| ||||
Sbjct 492 GATGGAAGAACTCTTGCAGATTACAACATTCAAAAGGAATCAACATTGCACTTGGT 437
>seq42417
Length=17167
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208
|||||||| ||| | || ||||| || || |||||||||||| | |||| | || |||
Sbjct 2786 GATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGAAGAACTCTTGCAGAT 2727
Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247
||||| || |||||||| || ||||||||| | || |||
Sbjct 2726 TACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 2688
>seq592805
Length=13616
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| || || | ||| ||||| || ||| | |||||||| || || || |||||
Sbjct 383 GATAAGGAGGGAATTCCCCCGGATCAGCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAG 442
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247
|| || || |||||||||||||||| || ||||| || || |||||| ||||| |
Sbjct 443 GACGGCAGGACCCTGGCCGATTACAATATCCAGAAGGAGTCGACCCTTCACTTGGTGCTC 502
Query 25248 CGATT 25252
|||||
Sbjct 503 CGATT 507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 407662847387924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |