Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq51887 86.0 5e-12 seq25161 86.0 5e-12 seq581596 84.2 2e-11 seq42417 84.2 2e-11 seq592805 82.4 6e-11 >seq51887 Length=16442 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || |||||||| ||| | || ||||| || || ||||||||| Sbjct 8377 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 8318 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| | || |||||||| || |||||||| || ||||||||| | || ||| Sbjct 8317 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 8258 >seq25161 Length=2200 Score = 86.0 bits (94), Expect = 5e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| || || || |||||||| |||||||| | || ||| | || | ||||| Sbjct 674 AGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGA 733 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 ||||||||| |||||||| |||||||||||| ||||| Sbjct 734 TTACAATATCCAAAAGGAGTCTACTCTTCACCTGGTG 770 >seq581596 Length=910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || || ||| | ||| |||||| || || || |||||||| || ||||| ||||| Sbjct 552 GACAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAG 493 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| | |||| | || |||||||| |||||||||||||| || | ||| |||| Sbjct 492 GATGGAAGAACTCTTGCAGATTACAACATTCAAAAGGAATCAACATTGCACTTGGT 437 >seq42417 Length=17167 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 |||||||| ||| | || ||||| || || |||||||||||| | |||| | || ||| Sbjct 2786 GATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGAAGAACTCTTGCAGAT 2727 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||||| || |||||||| || ||||||||| | || ||| Sbjct 2726 TACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 2688 >seq592805 Length=13616 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || || | ||| ||||| || ||| | |||||||| || || || ||||| Sbjct 383 GATAAGGAGGGAATTCCCCCGGATCAGCAGAGATTGATCTTTGCCGGTAAGCAGTTGGAG 442 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || || |||||||||||||||| || ||||| || || |||||| ||||| | Sbjct 443 GACGGCAGGACCCTGGCCGATTACAATATCCAGAAGGAGTCGACCCTTCACTTGGTGCTC 502 Query 25248 CGATT 25252 ||||| Sbjct 503 CGATT 507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407662847387924