Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq53130 104 3e-17
seq51887 104 3e-17
seq42417 100 4e-16
seq526479 96.9 5e-15
seq610020 95.1 2e-14
seq592805 95.1 2e-14
seq492976 95.1 2e-14
seq540191 93.3 6e-14
seq488379 86.0 9e-12
seq35568 84.2 3e-11
seq32509 84.2 3e-11
>seq53130
Length=9294
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || | |||||||| | ||| || || || ||||| ||||| |||
Sbjct 5215 CCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGAA 5274
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || |||| ||| || ||||| || ||||| |||||||| || ||||||||||| ||
Sbjct 5275 AGGGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGG 5334
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||| ||
Sbjct 5335 ATCCCTTCCTTATCATG 5351
>seq51887
Length=16442
Score = 104 bits (114), Expect = 3e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||| || || ||||| || | || | ||| || || || || || ||||||
Sbjct 8241 GTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCT 8300
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||||||||| | ||| || ||||| || || |||||||||||||| || ||||| |||
Sbjct 8301 GCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 8360
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || ||||| ||||| ||
Sbjct 8361 GGGATGCCTTCCTTATCCTG 8380
>seq42417
Length=17167
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
|||||||| || || ||||| || | || | ||| || || || || || ||||||
Sbjct 2671 GTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCT 2730
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||||||||| | ||| || ||||| || || |||||||||||||| || ||||| |||
Sbjct 2731 GCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 2790
Query 146168 GGAATTCCTTCTTTATCTTG 146187
| || ||||| ||||| ||
Sbjct 2791 GTGATGCCTTCCTTATCCTG 2810
>seq526479
Length=2113
Score = 96.9 bits (106), Expect = 5e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139
||| || ||||| ||||||||||||| ||| |||| | ||| || || || || ||
Sbjct 2109 AGTTGACTCTTTTTGGATATTATAATCTGCAAGGGTTCGACCATCTTCCAACTGCTTACC 2050
Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
||||||||||||||| |||||||| ||||| || ||||| ||||| ||
Sbjct 2049 AGCAAAAATCAATCTCTGCTGATCTGGAGGGATGCCTTCCTTATCCTG 2002
>seq610020
Length=13068
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107
||||| || || | || || || | || | ||| || ||||| ||||||||||||
Sbjct 6296 GTTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCT 6355
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
| ||| |||| | ||| || || || || ||||||||||||| ||| |||||||| |||
Sbjct 6356 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGA 6415
Query 146168 GGAATTCCTTCTTTATCTTG 146187
|| || ||||| ||||| ||
Sbjct 6416 GGGATGCCTTCCTTATCCTG 6435
>seq592805
Length=13616
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || | ||||| || | ||||| || || ||||| ||||| | |
Sbjct 744 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAATCCGCA 685
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||| |||| ||| || ||||| |||||||| || ||||| || ||||||||||| ||
Sbjct 684 AGAGACCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 625
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||| ||
Sbjct 624 ATCCCTTCCTTATCCTG 608
>seq492976
Length=9861
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || | |||| ||| | ||| || || || ||||| ||||| | |
Sbjct 8366 CCACCACGAAGCCTGAGCACCAGATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 8425
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || |||| ||| || ||||| || ||||| |||||||| || ||||||||||| ||
Sbjct 8426 AGCGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGG 8485
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||| ||
Sbjct 8486 ATCCCTTCCTTATCCTG 8502
>seq540191
Length=2323
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | ||||| | |||| |||| ||| ||||| ||| || ||||| || || |
Sbjct 50 CCACCGCGGAGTCTGAGCACCAGGTGTAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 108
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||| || | | ||| || | || |||||||||||||||| ||||||||| || || ||
Sbjct 109 AAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGG 168
Query 146170 AATTCCTTCTTTATCTTG 146187
||| ||||| ||||||||
Sbjct 169 AATGCCTTCCTTATCTTG 186
>seq488379
Length=457
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || | ||||| || | || || || || ||||| ||||| | |
Sbjct 5 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGCA 64
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||| |||| || || || || || || ||||| |||||||| ||||||||||| ||
Sbjct 65 AGAGTCCTGCCGTCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGTGGG 124
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||| ||
Sbjct 125 ATCCCTTCCTTATCCTG 141
>seq35568
Length=7068
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | ||||| | |||| || | ||| ||||| ||| || ||||| || || |
Sbjct 3946 CCACCGCGGAGTCTGAGAACCAGGTGAAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 4004
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
||| || | | ||| || | || || |||||||||||||| |||||||| ||||||||
Sbjct 4005 AAGGGTGCGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTTTGCTGGTCCGGAGG 4064
Query 146170 AATTCCTTCTTTATCTTG 146187
|| ||||| || |||||
Sbjct 4065 GATGCCTTCCTTGTCTTG 4082
>seq32509
Length=4583
Score = 84.2 bits (92), Expect = 3e-11
Identities = 83/105 (79%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 146084 GATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGC 146142
||||| ||| || ||||| || || | ||| || | | ||| || | |||||||||||
Sbjct 1931 GATTCCTTTTGA-ATATTGTAGTCAGCAAGGGTGCGTCCATCCTCGAGCTGTTTTCCAGC 1989
Query 146143 AAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
|||||||| ||||||||| || || ||||| ||||| ||||||||
Sbjct 1990 AAAAATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTATCTTG 2034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 737708621918720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |