Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq53130 104 3e-17 seq51887 104 3e-17 seq42417 100 4e-16 seq526479 96.9 5e-15 seq610020 95.1 2e-14 seq592805 95.1 2e-14 seq492976 95.1 2e-14 seq540191 93.3 6e-14 seq488379 86.0 9e-12 seq35568 84.2 3e-11 seq32509 84.2 3e-11 >seq53130 Length=9294 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||||||| | ||| || || || ||||| ||||| ||| Sbjct 5215 CCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGAA 5274 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || |||| ||| || ||||| || ||||| |||||||| || ||||||||||| || Sbjct 5275 AGGGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGG 5334 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 5335 ATCCCTTCCTTATCATG 5351 >seq51887 Length=16442 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || || ||||| || | || | ||| || || || || || |||||| Sbjct 8241 GTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCT 8300 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || ||||| || || |||||||||||||| || ||||| ||| Sbjct 8301 GCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 8360 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 8361 GGGATGCCTTCCTTATCCTG 8380 >seq42417 Length=17167 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| || || ||||| || | || | ||| || || || || || |||||| Sbjct 2671 GTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCT 2730 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||||| | ||| || ||||| || || |||||||||||||| || ||||| ||| Sbjct 2731 GCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGA 2790 Query 146168 GGAATTCCTTCTTTATCTTG 146187 | || ||||| ||||| || Sbjct 2791 GTGATGCCTTCCTTATCCTG 2810 >seq526479 Length=2113 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| || ||||| ||||||||||||| ||| |||| | ||| || || || || || Sbjct 2109 AGTTGACTCTTTTTGGATATTATAATCTGCAAGGGTTCGACCATCTTCCAACTGCTTACC 2050 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||||||||||| |||||||| ||||| || ||||| ||||| || Sbjct 2049 AGCAAAAATCAATCTCTGCTGATCTGGAGGGATGCCTTCCTTATCCTG 2002 >seq610020 Length=13068 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || | || || || | || | ||| || ||||| |||||||||||| Sbjct 6296 GTTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCT 6355 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || || || || ||||||||||||| ||| |||||||| ||| Sbjct 6356 GCAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGA 6415 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 6416 GGGATGCCTTCCTTATCCTG 6435 >seq592805 Length=13616 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | ||||| || | ||||| || || ||||| ||||| | | Sbjct 744 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAATCCGCA 685 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||| |||| ||| || ||||| |||||||| || ||||| || ||||||||||| || Sbjct 684 AGAGACCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGG 625 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 624 ATCCCTTCCTTATCCTG 608 >seq492976 Length=9861 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | |||| ||| | ||| || || || ||||| ||||| | | Sbjct 8366 CCACCACGAAGCCTGAGCACCAGATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGCA 8425 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || |||| ||| || ||||| || ||||| |||||||| || ||||||||||| || Sbjct 8426 AGCGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGG 8485 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 8486 ATCCCTTCCTTATCCTG 8502 >seq540191 Length=2323 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| | |||| |||| ||| ||||| ||| || ||||| || || | Sbjct 50 CCACCGCGGAGTCTGAGCACCAGGTGTAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 108 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || | || |||||||||||||||| ||||||||| || || || Sbjct 109 AAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGG 168 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 169 AATGCCTTCCTTATCTTG 186 >seq488379 Length=457 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | ||||| || | || || || || ||||| ||||| | | Sbjct 5 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGCA 64 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| |||| || || || || || || ||||| |||||||| ||||||||||| || Sbjct 65 AGAGTCCTGCCGTCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGTGGG 124 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 125 ATCCCTTCCTTATCCTG 141 >seq35568 Length=7068 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| | |||| || | ||| ||||| ||| || ||||| || || | Sbjct 3946 CCACCGCGGAGTCTGAGAACCAGGTGAAGAGTCGATTCCTTTTGA-ATATTGTAGTCAGC 4004 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || | || || |||||||||||||| |||||||| |||||||| Sbjct 4005 AAGGGTGCGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTTTGCTGGTCCGGAGG 4064 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 4065 GATGCCTTCCTTGTCTTG 4082 >seq32509 Length=4583 Score = 84.2 bits (92), Expect = 3e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 146084 GATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGC 146142 ||||| ||| || ||||| || || | ||| || | | ||| || | ||||||||||| Sbjct 1931 GATTCCTTTTGA-ATATTGTAGTCAGCAAGGGTGCGTCCATCCTCGAGCTGTTTTCCAGC 1989 Query 146143 AAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||||||| || || ||||| ||||| |||||||| Sbjct 1990 AAAAATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTATCTTG 2034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737708621918720