Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq25161 98.7 7e-16
seq36855 95.1 9e-15
seq476667 89.7 4e-13
seq51887 86.0 5e-12
seq581596 82.4 6e-11
seq42417 82.4 6e-11
>seq25161
Length=2200
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || ||||| || |||| ||| || || || |||||||| ||||||||||| ||
Sbjct 559 CCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCG 500
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | || || | || ||||| ||| |||| || |||||||| ||| |||
Sbjct 499 AGTGTCCGCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGA 440
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || ||||| || || | |||| ||||| | ||| ||||||| | ||
Sbjct 439 ATTCCCTCCTTGTCTTGGATCT-TTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAAC 381
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||| ||||||| | ||||| || | ||||| ||||| || |||||
Sbjct 380 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTCACAAAGATCTGCAT 333
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || |||| || |||| ||| | |||||||| ||||||||||||||||| ||
Sbjct 1016 TCCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGC 957
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | | || ||||| ||||| || ||| |||| || || || ||||| |||
Sbjct 956 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 897
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| || ||||| || |||| | |||||| | ||| || ||| | ||
Sbjct 896 GATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTTTCCAC 837
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | |||||| | || || || | || |||||||| || ||||||
Sbjct 836 CTCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCATT 788
>seq36855
Length=2596
Score = 95.1 bits (104), Expect = 9e-15
Identities = 162/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || |||||||| |||| ||| || || || |||||||||||||||||||| ||
Sbjct 461 CCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCA 520
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| |||| | ||| || | || ||||| ||| |||| || ||||| || || |||
Sbjct 521 AGTGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 580
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| || ||||| || || | | |||||| | ||| | ||||| | ||
Sbjct 581 ATTCCCTCCTTGTCTTGGATCTTTGCCTTGACATTGTCAATAATGTCAGAGCTTTCAACC 640
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333
|| | |||||| | ||||| || | ||||| ||||| || ||||| | | |||
Sbjct 641 TCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCATCTGTTAAC 695
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || |||| ||| | ||||||||| ||||||||||||||||| ||
Sbjct 4 TCCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGC 63
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | | ||| ||||| ||||| || | | |||| || || || ||||| |||
Sbjct 64 AAGAGTTCTTCCATCCTCCAACTGTTTACCTGTAAAGATGAGCCTCTGCTGATCTGGGGG 123
Query 18218 CACGCCTTCCTTATC 18232
| || ||||| ||
Sbjct 124 AATACCCTCCTTGTC 138
>seq476667
Length=529
Score = 89.7 bits (98), Expect = 4e-13
Identities = 163/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || |||| ||| | ||||||||| ||||||||||||||||| ||
Sbjct 304 TCCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGC 245
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | | || ||||| ||||| || ||| |||| || || || ||||| |||
Sbjct 244 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 185
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCT--- 18273
| || ||||| || || | |||||| | | || ||| || ||| | |||
Sbjct 184 AATACCCTCCTTGTCCTGGATCT-TTGCTTTAACATTGTCAATTGTATCA--GAGCTTTC 128
Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
| | |||| ||||| |||| || |||| || || ||||| |||||||||
Sbjct 127 CACCTCCAAT-GTGATTGTTTTCCCAGTCAGGGTCTTCACAAAGATTTGCATT 76
>seq51887
Length=16442
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| |||| || || | || | |||||| ||||| || ||||| |||||||| || ||
Sbjct 8243 TCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTGC 8302
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | | |||||||||||| || || ||| | || | ||| |||||||| ||
Sbjct 8303 AAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGG 8362
Query 18218 CACGCCTTCCTTATC 18232
| ||||||||||||
Sbjct 8363 GATGCCTTCCTTATC 8377
>seq581596
Length=910
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| || || || | || |||| ||| | ||||||||| |||||||||||||| || ||
Sbjct 418 TCCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAATCTGC 477
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | | ||| ||||| ||||| || ||| |||| || || || ||||| |||
Sbjct 478 AAGAGTTCTTCCATCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 537
Query 18218 CACGCCTTCCTTATC 18232
| || ||||| ||
Sbjct 538 AATACCCTCCTTGTC 552
>seq42417
Length=17167
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
||| |||| || || | || | |||||| ||||| || ||||| |||||||| || ||
Sbjct 2673 TCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTGC 2732
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| ||| | | |||||||||||| || || ||| | || | ||| |||||||| |
Sbjct 2733 AAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGT 2792
Query 18218 CACGCCTTCCTTATC 18232
| ||||||||||||
Sbjct 2793 GATGCCTTCCTTATC 2807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 376449999560670
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |