Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq25161 98.7 7e-16 seq36855 95.1 9e-15 seq476667 89.7 4e-13 seq51887 86.0 5e-12 seq581596 82.4 6e-11 seq42417 82.4 6e-11 >seq25161 Length=2200 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || ||||| || |||| ||| || || || |||||||| ||||||||||| || Sbjct 559 CCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCG 500 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | || || | || ||||| ||| |||| || |||||||| ||| ||| Sbjct 499 AGTGTCCGCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGA 440 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || || | |||| ||||| | ||| ||||||| | || Sbjct 439 ATTCCCTCCTTGTCTTGGATCT-TTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAAC 381 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| || | ||||| ||||| || ||||| Sbjct 380 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTTTTCACAAAGATCTGCAT 333 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || |||| || |||| ||| | |||||||| ||||||||||||||||| || Sbjct 1016 TCCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGC 957 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | || ||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 956 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 897 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || |||| | |||||| | ||| || ||| | || Sbjct 896 GATACCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTTTCCAC 837 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | || || || | || |||||||| || |||||| Sbjct 836 CTCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCATT 788 >seq36855 Length=2596 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||||||| |||| ||| || || || |||||||||||||||||||| || Sbjct 461 CCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCA 520 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | ||| || | || ||||| ||| |||| || ||||| || || ||| Sbjct 521 AGTGTTCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 580 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || ||||| || || | | |||||| | ||| | ||||| | || Sbjct 581 ATTCCCTCCTTGTCTTGGATCTTTGCCTTGACATTGTCAATAATGTCAGAGCTTTCAACC 640 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 || | |||||| | ||||| || | ||||| ||||| || ||||| | | ||| Sbjct 641 TCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCATCTGTTAAC 695 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| ||| | ||||||||| ||||||||||||||||| || Sbjct 4 TCCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGC 63 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||| ||||| ||||| || | | |||| || || || ||||| ||| Sbjct 64 AAGAGTTCTTCCATCCTCCAACTGTTTACCTGTAAAGATGAGCCTCTGCTGATCTGGGGG 123 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 124 AATACCCTCCTTGTC 138 >seq476667 Length=529 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| ||| | ||||||||| ||||||||||||||||| || Sbjct 304 TCCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGC 245 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | || ||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 244 AAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 185 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCT--- 18273 | || ||||| || || | |||||| | | || ||| || ||| | ||| Sbjct 184 AATACCCTCCTTGTCCTGGATCT-TTGCTTTAACATTGTCAATTGTATCA--GAGCTTTC 128 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | | |||| ||||| |||| || |||| || || ||||| ||||||||| Sbjct 127 CACCTCCAAT-GTGATTGTTTTCCCAGTCAGGGTCTTCACAAAGATTTGCATT 76 >seq51887 Length=16442 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | || | |||||| ||||| || ||||| |||||||| || || Sbjct 8243 TCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTGC 8302 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| | || | ||| |||||||| || Sbjct 8303 AAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGG 8362 Query 18218 CACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 8363 GATGCCTTCCTTATC 8377 >seq581596 Length=910 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || || | || |||| ||| | ||||||||| |||||||||||||| || || Sbjct 418 TCCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAATCTGC 477 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||| ||||| ||||| || ||| |||| || || || ||||| ||| Sbjct 478 AAGAGTTCTTCCATCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGG 537 Query 18218 CACGCCTTCCTTATC 18232 | || ||||| || Sbjct 538 AATACCCTCCTTGTC 552 >seq42417 Length=17167 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || | || | |||||| ||||| || ||||| |||||||| || || Sbjct 2673 TCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTGC 2732 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| | || | ||| |||||||| | Sbjct 2733 AAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAGT 2792 Query 18218 CACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 2793 GATGCCTTCCTTATC 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 376449999560670