Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq620679 212 6e-50 seq492976 113 4e-20 seq229824 113 4e-20 seq35568 105 6e-18 seq540191 104 2e-17 seq467159 104 2e-17 seq62569 98.7 9e-16 seq30955 98.7 9e-16 seq614642 95.1 1e-14 seq36855 95.1 1e-14 seq468900 87.8 2e-12 >seq620679 Length=2600 Score = 212 bits (234), Expect = 6e-50 Identities = 411/596 (69%), Gaps = 13/596 (2%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| |||||| | || || || || ||| | |||||||| ||||| || || ||||| Sbjct 2328 CATGTTCCCGATTCAGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTT 2269 Query 57605 TTGGACCGTCGAAGAAGTAGACCT-GTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAG 57663 ||||||| ||| || || || || | | ||| | | | || | ||||| |||| || Sbjct 2268 CTGGACCGCCGAGGAGGTCGATCTCGACCAAG-ACCAGCGCCACTGGGAAACCCT--AAC 2212 Query 57664 AATCTGAGAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 | | ||||| | || || | ||||| | || || |||||||| ||||| || || Sbjct 2211 CCCCGGCGAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCAT 2152 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 || ||||||| | | || ||| || | || || || || |||||||| | Sbjct 2151 CGTCCTCGAGAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGC 2092 Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||| ||||| || || | || ||||| ||| | || || || ||||| || ||| | Sbjct 2091 CTTCTACGGCTTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCT 2032 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 ||| || ||| | || ||| ||||||||| | || || || |||| || || Sbjct 2031 CGAGACCTACATCAAAGACTCGGACGAGAAATCCCGTCTCTTTCGGGCCGTCGACACCAT 1972 Query 57902 GCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA 57960 || ||| |||| || ||||| ||||| | | |||||||| | || | ||| | Sbjct 1971 CCCTTGCG-TCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGA---CGGCTCGGAGA 1916 Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020 | ||||| ||| | | | || |||||| ||| ||||| || ||||| ||||| |||| Sbjct 1915 CTTTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCT 1856 Query 58021 T-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 | |||| | ||||||||| | || || ||||| ||||||| || ||||| || ||| Sbjct 1855 TCTGCG-CGATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAAC 1797 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 |||||||| ||||| || || || ||||| || || |||||||| | ||||| Sbjct 1796 GAGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCTTCTCTACTC 1741 >seq492976 Length=9861 Score = 113 bits (124), Expect = 4e-20 Identities = 172/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 31180 AATTGAATC--AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTC 31237 |||| |||| || ||||||||||||||| || || || || ||||| || |||||| || Sbjct 9063 AATTCAATCCCAATCATGCAAATTTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTC 9004 Query 31238 GACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGC 31297 || || || ||||||| |||| | ||||| | || ||||||||| ||| Sbjct 9003 GAGGTCGAGAGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGC 8944 Query 31298 GTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACT 31357 | || || ||||||||| | ||||| ||||| || || ||| | || ||| || Sbjct 8943 ATCCCTCCTGACCAGCAGAGGCTAATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACC 8884 Query 31358 ATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGC 31417 | ||| || ||||| || || || |||||||| || ||||| || | || ||||| Sbjct 8883 CTCGCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTCCGTCTCAGGGGT 8824 Query 31418 GGTA 31421 |||| Sbjct 8823 GGTA 8820 >seq229824 Length=340 Score = 113 bits (124), Expect = 4e-20 Identities = 163/227 (72%), Gaps = 5/227 (2%) Strand=Plus/Plus Query 57910 TCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCG 57969 |||| || ||||| ||||| | | |||||||| | || || | || ||||| | Sbjct 49 TCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCCGAG---ACTTTCGCGG 105 Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCA 58028 || || | | || |||||| ||| ||||| || ||||| ||||| ||||| |||| | Sbjct 106 AGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCG-CG 164 Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088 ||||||||| | || || ||||| ||||||| || ||||| || ||||||||||| Sbjct 165 ATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGAGTTGATC 224 Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 ||||| || || || ||||| || || ||||| || | ||||| Sbjct 225 TCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGTCTTCTCTACTC 271 >seq35568 Length=7068 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 4172 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 4113 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||||||| | || || |||||| Sbjct 4112 GACACCATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCGGACCAG 4053 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | | || || ||||| || ||| | || || | | | || | || || || Sbjct 4052 CAAAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGA-TGGACGCACCCTTGCTGACTACAA 3994 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| |||||||||||||| ||||| || ||||| | || |||| Sbjct 3993 TATTCAAAAGGAATCGACTCTTCACCTGGTTCTCAGACTCCGCGGTGGTA 3944 >seq540191 Length=2323 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 276 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 217 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| || ||||||||| | || || |||||| Sbjct 216 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 157 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || ||||| || ||| | || || | | | || | || || || Sbjct 156 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGA-TGGACGCACCCTTGCTGACTACAA 98 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| ||||||||||| || ||||| || ||||| Sbjct 97 TATTCAAAAGGAATCGACTCTACACCTGGTGCTCAGACT 59 >seq467159 Length=2775 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || || || || || || |||||| |||| || || Sbjct 1697 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGT 1756 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | ||||| | Sbjct 1757 CCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 1816 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| ||||| ||| | || ||| ||| | ||| | Sbjct 1817 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCCGACT 1876 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || ||||| ||||| || || || || Sbjct 1877 ACAACATACAGAAGGAATCAACTCTCCACCTCGTGCT 1913 >seq62569 Length=7807 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || || || || || || |||||| |||| || || Sbjct 895 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGT 954 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | ||||| | Sbjct 955 CCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 1014 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| ||||| ||| | || ||| || | ||| | Sbjct 1015 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACT 1074 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || |||||||| || || || || Sbjct 1075 ACAACATCCAGAAGGAGTCGACTCTCCACCTTGTGCT 1111 >seq30955 Length=2588 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| || || || || || || || |||||| |||| || || Sbjct 1438 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGT 1379 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||||| |||| | ||||| | || ||||||||| ||| | ||||| | Sbjct 1378 CCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 1319 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| ||||| ||| | || ||| || | ||| | Sbjct 1318 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACT 1259 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| || || || |||||||| || || || || Sbjct 1258 ACAACATCCAGAAGGAGTCGACTCTCCACCTTGTGCT 1222 >seq614642 Length=11660 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || |||||||| | || || || | Sbjct 8608 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTGGAGTCC 8549 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || | || |||||||| ||| | ||||| ||| Sbjct 8548 TCCGACACCATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGAC 8489 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || |||||| | || ||| |||| | ||| || Sbjct 8488 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGGACTCTCGCCGACTAC 8429 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| || ||||| || Sbjct 8428 AACATCCAGAAGGAGTCGACTCTCCACCTGGTGCT 8394 >seq36855 Length=2596 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || |||||||| || |||||| |||| |||||| || Sbjct 687 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 628 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| || ||| | |||||||| || | || || ||||| Sbjct 627 GACATTATTGACAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGAATCCCCCCAGACCA 569 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 ||| | || || || |||||||| ||| | || || | || | || || || | Sbjct 568 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGA-TGGCCGAACACTTGCTGACTACA 510 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||||| || || || || ||||| |||||||| Sbjct 509 ACATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACT 470 >seq468900 Length=687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || || || ||||| || |||||| | || || || | || Sbjct 145 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 204 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || |||| | | | ||| | ||||||||| || | || || ||||| Sbjct 205 GACACCATTGACAACGTTAAGGCCAAGATTCA-GGACAAGGAGGGAATTCCCCCGGACCA 263 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || || || | ||||| || Sbjct 264 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTGCTGATTACAA 323 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || ||| |||| ||| | ||| | || |||| Sbjct 324 TATCCAGAAGGAGTCGACCCTCCATTTGGTGCTTCGTCTGCGTGGTGGTA 373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442278467370720