Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 212 6e-50
seq492976 113 4e-20
seq229824 113 4e-20
seq35568 105 6e-18
seq540191 104 2e-17
seq467159 104 2e-17
seq62569 98.7 9e-16
seq30955 98.7 9e-16
seq614642 95.1 1e-14
seq36855 95.1 1e-14
seq468900 87.8 2e-12
>seq620679
Length=2600
Score = 212 bits (234), Expect = 6e-50
Identities = 411/596 (69%), Gaps = 13/596 (2%)
Strand=Plus/Minus
Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604
|||||| |||||| | || || || || ||| | |||||||| ||||| || || |||||
Sbjct 2328 CATGTTCCCGATTCAGTACCCGGAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTT 2269
Query 57605 TTGGACCGTCGAAGAAGTAGACCT-GTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAG 57663
||||||| ||| || || || || | | ||| | | | || | ||||| |||| ||
Sbjct 2268 CTGGACCGCCGAGGAGGTCGATCTCGACCAAG-ACCAGCGCCACTGGGAAACCCT--AAC 2212
Query 57664 AATCTGAGAGAA--ATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721
| | ||||| | || || | ||||| | || || |||||||| ||||| || ||
Sbjct 2211 CCCCGGCGAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCAT 2152
Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781
|| ||||||| | | || ||| || | || || || || |||||||| |
Sbjct 2151 CGTCCTCGAGAATCTCGCCGGAAGGTTCATGAAGGAGGTCCAGGTCTCGGAGGCGCGTGC 2092
Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841
||| ||||| || || | || ||||| ||| | || || || ||||| || ||| |
Sbjct 2091 CTTCTACGGCTTCCAGATCGCGATTGAGAACATCCACTCCGAGATGTACAGCCTCCTCCT 2032
Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901
||| || ||| | || ||| ||||||||| | || || || |||| || ||
Sbjct 2031 CGAGACCTACATCAAAGACTCGGACGAGAAATCCCGTCTCTTTCGGGCCGTCGACACCAT 1972
Query 57902 GCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA 57960
|| ||| |||| || ||||| ||||| | | |||||||| | || | ||| |
Sbjct 1971 CCCTTGCG-TCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGA---CGGCTCGGAGA 1916
Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020
| ||||| ||| | | | || |||||| ||| ||||| || ||||| ||||| ||||
Sbjct 1915 CTTTCGCGGAGCGAATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCT 1856
Query 58021 T-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079
| |||| | ||||||||| | || || ||||| ||||||| || ||||| || |||
Sbjct 1855 TCTGCG-CGATATTTTGGCTTAAAAAGCGCGGGTTGATGCCGGGTCTGACCTTCTCGAAC 1797
Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135
|||||||| ||||| || || || ||||| || || |||||||| | |||||
Sbjct 1796 GAGTTGATCTCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGCCTTCTCTACTC 1741
>seq492976
Length=9861
Score = 113 bits (124), Expect = 4e-20
Identities = 172/244 (70%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 31180 AATTGAATC--AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTC 31237
|||| |||| || ||||||||||||||| || || || || ||||| || |||||| ||
Sbjct 9063 AATTCAATCCCAATCATGCAAATTTTCGTGAAAACCCTAACCGGCAAGACCATCACCCTC 9004
Query 31238 GACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGC 31297
|| || || ||||||| |||| | ||||| | || ||||||||| |||
Sbjct 9003 GAGGTCGAGAGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGC 8944
Query 31298 GTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACT 31357
| || || ||||||||| | ||||| ||||| || || ||| | || ||| ||
Sbjct 8943 ATCCCTCCTGACCAGCAGAGGCTAATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACC 8884
Query 31358 ATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGC 31417
| ||| || ||||| || || || |||||||| || ||||| || | || |||||
Sbjct 8883 CTCGCCGACTACAACATCCAGAAGGAGTCGACTCTCCACCTGGTGCTCCGTCTCAGGGGT 8824
Query 31418 GGTA 31421
||||
Sbjct 8823 GGTA 8820
>seq229824
Length=340
Score = 113 bits (124), Expect = 4e-20
Identities = 163/227 (72%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 57910 TCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCG 57969
|||| || ||||| ||||| | | |||||||| | || || | || ||||| |
Sbjct 49 TCGCGAAAAAGGCGCAGTGGGCCCTGAAATGGATCGACGGCTCCGAG---ACTTTCGCGG 105
Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCA 58028
|| || | | || |||||| ||| ||||| || ||||| ||||| ||||| |||| |
Sbjct 106 AGCGGATCGTGGCCTTCGCCTGCGTGGAAGGGATCTTCTTCTCGGGGAGCTTCTGCG-CG 164
Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088
||||||||| | || || ||||| ||||||| || ||||| || |||||||||||
Sbjct 165 ATATTTTGGCTAAAAAAGCGCGGGTTGATGCCGGGTCTGACTTTCTCGAACGAGTTGATC 224
Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135
||||| || || || ||||| || || ||||| || | |||||
Sbjct 225 TCGCGAGATGAAGGCCTCCACTGCGACTTCGCGTGTCTTCTCTACTC 271
>seq35568
Length=7068
Score = 105 bits (116), Expect = 6e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || ||||| || |||||| | || |||||| ||
Sbjct 4172 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 4113
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | ||| |||||||||||| | || || ||||||
Sbjct 4112 GACACCATTGATAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCTCCGGACCAG 4053
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| | | || || ||||| || ||| | || || | | | || | || || ||
Sbjct 4052 CAAAGGTTGATTTTTGCTGGTAAGCAGCTTGAGGA-TGGACGCACCCTTGCTGACTACAA 3994
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||||||| |||||||||||||| ||||| || ||||| | || ||||
Sbjct 3993 TATTCAAAAGGAATCGACTCTTCACCTGGTTCTCAGACTCCGCGGTGGTA 3944
>seq540191
Length=2323
Score = 104 bits (114), Expect = 2e-17
Identities = 156/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| |||||||| || ||||| || |||||| | || |||||| ||
Sbjct 276 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 217
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | ||| || ||||||||| | || || ||||||
Sbjct 216 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 157
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| | || || || ||||| || ||| | || || | | | || | || || ||
Sbjct 156 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGA-TGGACGCACCCTTGCTGACTACAA 98
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|||||||| ||||||||||| || ||||| || |||||
Sbjct 97 TATTCAAAAGGAATCGACTCTACACCTGGTGCTCAGACT 59
>seq467159
Length=2775
Score = 104 bits (114), Expect = 2e-17
Identities = 153/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| || || || || || || || |||||| |||| || ||
Sbjct 1697 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGT 1756
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || ||||||||| ||| | ||||| |
Sbjct 1757 CCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 1816
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || ||||| ||||| ||| | || ||| ||| | ||| |
Sbjct 1817 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCGCCGACT 1876
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| ||||| || || ||||| ||||| || || || ||
Sbjct 1877 ACAACATACAGAAGGAATCAACTCTCCACCTCGTGCT 1913
>seq62569
Length=7807
Score = 98.7 bits (108), Expect = 9e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| || || || || || || || |||||| |||| || ||
Sbjct 895 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGT 954
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || ||||||||| ||| | ||||| |
Sbjct 955 CCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 1014
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || ||||| ||||| ||| | || ||| || | ||| |
Sbjct 1015 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACT 1074
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| ||||| || || || |||||||| || || || ||
Sbjct 1075 ACAACATCCAGAAGGAGTCGACTCTCCACCTTGTGCT 1111
>seq30955
Length=2588
Score = 98.7 bits (108), Expect = 9e-16
Identities = 152/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| || || || || || || || |||||| |||| || ||
Sbjct 1438 CAACCATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTCGAGGTGGAGT 1379
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||||| |||| | ||||| | || ||||||||| ||| | ||||| |
Sbjct 1378 CCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGG 1319
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || ||||| ||||| ||| | || ||| || | ||| |
Sbjct 1318 ACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACT 1259
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
| ||||| || || || |||||||| || || || ||
Sbjct 1258 ACAACATCCAGAAGGAGTCGACTCTCCACCTTGTGCT 1222
>seq614642
Length=11660
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| || ||||| || || || || || || |||||||| | || || || |
Sbjct 8608 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTGGAGTCC 8549
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||||||| |||| | || || | || |||||||| ||| | ||||| |||
Sbjct 8548 TCCGACACCATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGAC 8489
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||||| || || ||||| || |||||| | || ||| |||| | ||| ||
Sbjct 8488 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGGACTCTCGCCGACTAC 8429
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||||| || || || |||||||| || ||||| ||
Sbjct 8428 AACATCCAGAAGGAGTCGACTCTCCACCTGGTGCT 8394
>seq36855
Length=2596
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || || || || |||||||| || |||||| |||| |||||| ||
Sbjct 687 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 628
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | | || | ||||| || ||| | |||||||| || | || || |||||
Sbjct 627 GACATTATTGACAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGAATCCCCCCAGACCA 569
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370
||| | || || || |||||||| ||| | || || | || | || || || |
Sbjct 568 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGA-TGGCCGAACACTTGCTGACTACA 510
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||||| || || || || ||||| ||||||||
Sbjct 509 ACATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACT 470
>seq468900
Length=687
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| || || || || ||||| || |||||| | || || || | ||
Sbjct 145 ATGCAAATTTTCGTGAAAACCCTCACCGGCAAGACTATCACCCTTGAGGTGGAGTCTTCT 204
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || |||| | | | ||| | ||||||||| || | || || |||||
Sbjct 205 GACACCATTGACAACGTTAAGGCCAAGATTCA-GGACAAGGAGGGAATTCCCCCGGACCA 263
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||||||| || || |||||||| ||| | || || || | ||||| ||
Sbjct 264 GCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTTGCTGATTACAA 323
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || || ||||| || ||| |||| ||| | ||| | || ||||
Sbjct 324 TATCCAGAAGGAGTCGACCCTCCATTTGGTGCTTCGTCTGCGTGGTGGTA 373
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 442278467370720
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