Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq620679 107 2e-18 >seq620679 Length=2600 Score = 107 bits (118), Expect = 2e-18 Identities = 376/581 (65%), Gaps = 12/581 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| || || || |||| || || ||||| || || || || Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 1812 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | || |||||||||||||||||||| | ||| || || |||||| Sbjct 1813 CCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAG 1872 Query 33702 ATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCGCTGTCATG 33757 || ||||| || ||| || ||||| | | || ||| | || | | || ||| Sbjct 1873 ATCCCTTCCAC-GCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTC--- 1928 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| || | ||||| | ||||| || || ||||| || || || | ||| Sbjct 1929 GATCCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCG 1988 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||||| | ||| || | ||||| | || || |||| | || || ||||| Sbjct 1989 AAAGAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACAT 2048 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || || ||||| ||||| || ||||| || |||||||| | ||||| | | Sbjct 2049 CTCGGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGAC 2108 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | || | | | || | ||| || || || || || ||| || Sbjct 2109 CTGGACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGC 2168 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT- 34056 || || || | || || | || || | || ||| | || ||||| | | ||| | Sbjct 2169 GAAGAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTG 2228 Query 34057 -CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | || |||| | ||| || || || | ||||| || || ||||| ||||| Sbjct 2229 GCGCTG--GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTC 2286 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || ||||| | |||||| || | || || || ||||| || Sbjct 2287 TTGTACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 2327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 624889544952480