Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq620679 93.3 6e-14 >seq620679 Length=2600 Score = 93.3 bits (102), Expect = 6e-14 Identities = 370/578 (64%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || ||||| |||||||| || || || |||| || || ||||| || || || || Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 1812 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276 || ||||| | || |||||||||||||||||||| | |||| | | | || || ||||| Sbjct 1813 CCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 1871 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336 || ||||| || || ||||| | | || ||| | || | | | | || Sbjct 1872 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTCGAT 1931 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| || | ||||| | ||||| || || ||||| || || || | || ||| Sbjct 1932 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAA 1991 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 |||| | ||| || | ||||| | || || || | | || || ||||| || Sbjct 1992 GAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 2051 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || || ||||| ||||| || || || || |||||||| | ||||| | | ||| Sbjct 2052 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 2111 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || || | || | | | || | ||| || || || ||||| ||| || || Sbjct 2112 GACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 2171 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAAT--CA 36634 || || | || || | || || | || ||| || ||||| | | ||| | | Sbjct 2172 GAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCG 2231 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694 || |||| | ||| || || || | ||||| || || ||||| ||||| || Sbjct 2232 CTG--GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTG 2289 Query 36695 TACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 ||||| | |||||| || | || ||||| || || || Sbjct 2290 TACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 2327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 653022877563440