Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 93.3 6e-14
>seq620679
Length=2600
Score = 93.3 bits (102), Expect = 6e-14
Identities = 370/578 (64%), Gaps = 6/578 (1%)
Strand=Plus/Plus
Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217
|| ||||| |||||||| || || || |||| || || ||||| || || || ||
Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 1812
Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 36276
|| ||||| | || |||||||||||||||||||| | |||| | | | || || |||||
Sbjct 1813 CCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 1871
Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 36336
|| ||||| || || ||||| | | || ||| | || | | | | ||
Sbjct 1872 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTCGAT 1931
Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396
||| || | ||||| | ||||| || || ||||| || || || | || |||
Sbjct 1932 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAA 1991
Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456
|||| | ||| || | ||||| | || || || | | || || ||||| ||
Sbjct 1992 GAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 2051
Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516
|| || ||||| ||||| || || || || |||||||| | ||||| | | |||
Sbjct 2052 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 2111
Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576
|| || | || | | | || | ||| || || || ||||| ||| || ||
Sbjct 2112 GACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 2171
Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAAT--CA 36634
|| || | || || | || || | || ||| || ||||| | | ||| | |
Sbjct 2172 GAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCG 2231
Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694
|| |||| | ||| || || || | ||||| || || ||||| ||||| ||
Sbjct 2232 CTG--GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTG 2289
Query 36695 TACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732
||||| | |||||| || | || ||||| || || ||
Sbjct 2290 TACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 2327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 653022877563440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |