Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq597173 95.1 1e-14 seq468900 95.1 1e-14 seq25161 91.5 1e-13 seq40556 89.7 5e-13 seq197473 87.8 2e-12 seq32509 87.8 2e-12 seq581596 84.2 2e-11 >seq597173 Length=998 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||||||||| ||||| || || || || || || ||| Sbjct 40 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 99 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || || |||| | | ||||||||||| ||| | Sbjct 100 TCC-TGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGAT 158 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 159 AGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 194 >seq468900 Length=687 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||||||||| ||||| || || || || || || ||| Sbjct 299 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTG 240 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || || |||| | | ||||||||||| ||| | Sbjct 239 TCC-TGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGAT 181 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 180 AGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 145 >seq25161 Length=2200 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | || ||||||||||| ||||| || || | ||| | | ||| || Sbjct 542 AACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTCCGCCCGTCCTC 483 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| ||||||| | ||| || || || || || || || ||||| Sbjct 482 AAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG 423 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| ||| | | || | ||||| | | || ||||||| ||| | ||||| Sbjct 422 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTT 363 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | ||||| || || || ||||| Sbjct 362 GCCCGTGAGGGTTTTCACAAAGATCTGCAT 333 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | || || || ||||||||||| || || | || || ||| || Sbjct 998 AACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTC 939 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||||||||| ||| |||| || | |||||||| || || || || || ||||| Sbjct 938 CAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCCTG 879 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||||||| || | | || | ||| || | | |||||||| | ||| | ||||| Sbjct 878 GATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTTTCCACCTCCAAGGTGATTGTCTT 819 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | ||| ||||| || || ||||| Sbjct 818 CCCAGTAAGCGTCTTTACAAAGATCTGCAT 789 >seq40556 Length=6144 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || |||||| |||||||||| ||||| || || || || || || ||| Sbjct 2914 TCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTG 2855 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || || |||| | | ||||||||||| ||| | Sbjct 2854 TCC-TGAATCTTGGCCTTAACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGAT 2796 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| || | ||||| ||||| |||||||| Sbjct 2795 AGTCTTGCCAGTGAGGGTTTTCACGAAAATTTGCAT 2760 >seq197473 Length=365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || || ||| |||| || | || ||||| ||||| ||||| || || Sbjct 303 GTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTT 244 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | ||||||| | ||||||||| | ||| || Sbjct 243 GTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGAC 184 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||| || || || || ||||| Sbjct 183 GGTCTTGCCGGTAAGCGTCTTCACAAAGATCTGCAT 148 >seq32509 Length=4583 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGAC----TCTTTTTGAATGTTATAAT 139592 ||| || |||| ||| | ||||| |||| || || || |||||||| || || | Sbjct 1893 GCCACCACGTAGACGAAGCACTAAATGAAGGGTGGATCGATTCCTTTTGAATATTGTAGT 1952 Query 139593 CGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCG 139651 | | |||| || | || ||||||||||| |||||| | ||||| | |||||| || Sbjct 1953 CAGCAAGGGTGCGTCCA-TCCTCGAGCTGTTTTCCAGCAAAAATCAGTCTTTGCTGGTCT 2011 Query 139652 GGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGC 139711 || || |||||||| || || |||||| ||| | | || | ||||| | | Sbjct 2012 GGGGGAATGCCTTCCTTATCTTGGATTTTGGCTTTGACATTGTCAATGGTGTCAGAGCAT 2071 Query 139712 TCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||||| ||| | |||||||| || | || || ||||| || ||||| Sbjct 2072 TCAACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCAT 2124 >seq581596 Length=910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || || || | || ||||| || || ||||| ||||| | Sbjct 191 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGAC 250 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||| |||||||| || || ||| |||| || | ||||| || || | Sbjct 251 AGTGTCCTACCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGAA 310 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| | |||| || | | || | |||||| | | ||||| Sbjct 311 ATGCCTTCTTTGTC-CTGAATCTTTGCCTTGATATTATCAATTGTGTCTGAGCTTTCCAC 369 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||| || || || || |||||||| Sbjct 370 TTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492182510027200