Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq620679 129 8e-25
>seq620679
Length=2600
Score = 129 bits (142), Expect = 8e-25
Identities = 378/578 (65%), Gaps = 6/578 (1%)
Strand=Plus/Plus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| ||||| |||||||| || || || |||| || | ||||| || || || ||
Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 1812
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078
|| ||||| | || |||||||||||||||||||| | |||| || ||| || |||||
Sbjct 1813 CCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 1871
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138
||| ||||| || ||| ||||| || | || ||| | || | | | | | ||
Sbjct 1872 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTCGAT 1931
Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198
||| || | ||||| | ||||| || || ||||| || || || | ||| |||
Sbjct 1932 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAA 1991
Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258
|||| | ||| || | ||||| | || || |||| | || || ||||| ||
Sbjct 1992 GAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 2051
Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318
|| || ||||| ||||| || ||||| || |||||||| | ||||| | | |||
Sbjct 2052 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 2111
Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378
|| || | || | | | || | ||| || || || ||||| ||| || ||
Sbjct 2112 GACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 2171
Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT--CA 50436
|| || | || || | || || || || ||| ||| ||||| | | ||| | |
Sbjct 2172 GAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCG 2231
Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496
|| |||| | ||| || || || | ||||| || || ||||| ||||| ||
Sbjct 2232 CTG--GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTG 2289
Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534
||||| | |||||| || | || || || ||||| ||
Sbjct 2290 TACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 2327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712648651904240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |