Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq488379 93.3 3e-14 seq592805 89.7 4e-13 seq468900 89.7 4e-13 seq53130 86.0 5e-12 seq429140 82.4 6e-11 >seq488379 Length=457 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | |||||| || | ||| |||||| || | ||||||||| | Sbjct 5 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGCA 64 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| ||||| || || |||||||| ||||||| ||| ||||| | || Sbjct 65 AGAGTCCTGCCGTCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGTGGG 124 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| | ||||| | ||| ||| ||| ||| ||| || Sbjct 125 ATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGG-AGCTCTCAAC 183 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || | ||| ||||||||||| ||||| Sbjct 184 CTCCAGGGTAATGGTCTTCCCTGTCAAAGTCTTCACAAAAATCTGCAT 231 >seq592805 Length=13616 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| || | || |||||| || | ||||||||||| || || | |||| || Sbjct 499 CACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTCCTGCCGTCCTC 440 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || |||||||| ||||||| ||| ||||| | || | || || || || Sbjct 439 CAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGAATTCCCTCCTTATCCTG 380 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || ||| |||||| ||| ||| || || | || || || | Sbjct 379 GATCTTAGCCTTGACGTTGTCAATCGTGTCG-GAGCTCTCAACCTCGAGAGTGATGGTCT 321 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | ||||| || || |||||||| || ||||| Sbjct 320 TCCCGGTAAGGGTCTTCACAAAGATCTGCAT 290 >seq468900 Length=687 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | ||||||||||| || |||||| || | ||||||||| | Sbjct 371 CCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGCA 312 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || || | || ||||| ||||| |||| ||||| || || | || Sbjct 311 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 252 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || ||| ||| | || || || ||| ||||| || ||| || Sbjct 251 ATTCCCTCCTTGTC-CTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 193 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || ||||| || |||||||| ||||||||||| Sbjct 192 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 145 >seq53130 Length=9294 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| |||||| || | ||||||||||| ||| || || | || || Sbjct 5460 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCCATCCTC 5519 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || ||||| || ||||| | ||| || || | || | || || || || Sbjct 5520 CAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 5579 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| ||||| || ||| || || ||| |||||| || | || || || | Sbjct 5580 GATCTTGGACTTGACGTTGTCAATGGTATC-AGAGCTCTCGACCTCGAGAGTGATCGTCT 5638 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||||||| ||||| || || || ||||| Sbjct 5639 TCCCGGTTAGGGTTTTGACGAAGATCTGCAT 5669 >seq429140 Length=2933 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| ||||| | ||||| |||| |||| ||| || || | ||||| || | Sbjct 268 GCCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTCTGAATGTTGTAGTCAGC 327 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | |||||| |||| || | || ||||| ||||| |||| | ||||| |||| || Sbjct 328 GAGTGTACGCCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCGGGGGG 387 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | || || || || |||| ||||||| || | | ||||| ||| | | | Sbjct 388 AATTCCCTCCTTGTCTTGGATCTTTGCTTTGACATTGTCTATAGTGTCAG-AGCTTTCAA 446 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || ||||| || || ||||||||||| || ||||| Sbjct 447 CCTCGAGGGTGATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378460146338028