Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq620679 123 3e-23 seq229824 84.2 3e-11 >seq620679 Length=2600 Score = 123 bits (136), Expect = 3e-23 Identities = 377/578 (65%), Gaps = 6/578 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| |||||||| || || ||||||| || || ||||| || || || || Sbjct 1753 CACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGA 1812 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| | || |||||||||||||||||||| | |||| | | | || || ||||| Sbjct 1813 CCCGGCATCAACCCGCGCTTTTTAAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGAA 1871 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 ||| ||||| || || ||||| | | || ||| | || | | | | || Sbjct 1872 GATCCCTTCCACGCAGGCGAAGGCCACGATTCGCTCCGCGAAAGTCTCCGAGCCGTCGAT 1931 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| || | ||||| | ||||| || || ||||| || || || | ||| ||| Sbjct 1932 CCATTTCAGGGCCCACTGCGCCTTTTTCGCGACGCAAGGGATGGTGTCGACGGCCCGAAA 1991 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 |||| | ||| || | ||||| | || || |||| | || || ||||| || Sbjct 1992 GAGACGGGATTTCTCGTCCGAGTCTTTGATGTAGGTCTCGAGGAGGAGGCTGTACATCTC 2051 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || ||||| ||||| || ||||| || |||||||| | ||||| | ||||| Sbjct 2052 GGAGTGGATGTTCTCAATCGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTG 2111 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || | || | | | || | ||| ||| || || ||||| ||| || || Sbjct 2112 GACCTCCTTCATGAACCTTCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCGGCGAA 2171 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT--CA 42541 || || | || || | || || | || ||| | || |||| | | ||| | | Sbjct 2172 GAAGGCGAGGACGTGAGTGATGAAGTGCTTCTCGCCGGGGGTTAGGGTTTCCCAGTGGCG 2231 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 || |||| | ||| || || || | ||||| || || || || ||||| || Sbjct 2232 CTG--GTCTTGGTCGAGATCGACCTCCTCGGCGGTCCAGAACGACGCCTCGGCCTTCTTG 2289 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAAT 42639 ||||| | |||||| || | || ||||| ||||| || Sbjct 2290 TACATCTCCCAGATCTCCGGGTACTGAATCGGGAACAT 2327 >seq229824 Length=340 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| |||||||| || || ||||||| || || ||||| || || || || Sbjct 260 ACACGCGAAGTCGCAGTGGAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAAGTCAG 201 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGA 42182 || ||||| | || |||||||| ||||||||||| | |||| | | | || || |||| Sbjct 200 ACCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATCG-CGCAGAAGCTCCCCGAGAAGA 142 Query 42183 AGATTCCTTCTAC 42195 |||| ||||| || Sbjct 141 AGATCCCTTCCAC 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665887820994160