Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq581596 95.1 1e-14 seq476667 84.2 2e-11 >seq581596 Length=910 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || ||||| | || || || || |||||||||||||| | Sbjct 191 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGAC 250 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||| ||||| || || || ||| |||| || | ||||| || || | Sbjct 251 AGTGTCCTACCGTCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGAA 310 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| ||| || | | || | ||||| | | ||| ||| Sbjct 311 ATGCCTTCTTTGTCCTGAATCTTTGCCTTGATATTATCAATTGTGTCTGAGCTTTCCACT 370 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || || ||||| || || || || |||||||| Sbjct 371 TCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 417 >seq476667 Length=529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 142961 CCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATT 143020 || |||| ||| | || ||||| | || || || || |||||||||||||| || | Sbjct 528 CCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGT 469 Query 143021 GTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATG 143080 || || || ||||| || || || ||| |||| || | ||||| || || || ||| Sbjct 468 GTCCTACCATCCTCGAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATG 409 Query 143081 CCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCA 143140 ||||||||||| || || || | | || | ||||| | | ||| ||||| Sbjct 408 CCTTCTTTGTCCTGAACCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCC 349 Query 143141 ACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | ||| | || || || ||||| || || || || |||||||| Sbjct 348 AAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503047227801120