Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq488379 104 2e-17 seq624305 96.9 3e-15 seq581596 93.3 3e-14 seq476667 93.3 3e-14 seq35568 93.3 3e-14 seq25161 93.3 3e-14 seq592805 89.7 4e-13 seq54869 89.7 4e-13 seq32509 87.8 1e-12 seq610020 86.0 5e-12 seq418407 86.0 5e-12 seq429140 84.2 2e-11 seq36855 84.2 2e-11 seq212778 82.4 6e-11 >seq488379 Length=457 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | ||||| ||||| || |||||||| || |||||||||||||| Sbjct 5 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGCA 64 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || || ||||||||| ||| ||||| ||| | || | ||||||||||||| || Sbjct 65 AGAGTCCTGCCGTCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGTGGG 124 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || || || || || || || | | | |||||| ||| Sbjct 125 ATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACC 184 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| || ||||| ||||| || |||||||| ||||| Sbjct 185 TCCAGGGTAATGGTCTTCCCTGTCAAAGTCTTCACAAAAATCTGCAT 231 >seq624305 Length=475 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 18832 CACCATGTGCA----ACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGT 18887 ||||| ||||| |||| ||||||||||||||||| || || || | ||| | | | Sbjct 324 CACCAAGTGCAGAGTACGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCCAT 265 Query 18888 CCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGT 18947 |||| ||||| ||||| ||| |||| | |||||||| || ||| | |||||| || | Sbjct 264 CCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTAT 205 Query 18948 CGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGG 19007 | ||| || ||| || | | | | ||||| | ||| || | || |||| Sbjct 204 CCTGAATCTTGGCTTTCACATTGTCAATCGTATCCGAACTCTCTACCTCCAACGTTATGG 145 Query 19008 TTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || ||||| | |||||||||||| || ||||| Sbjct 144 TCTTCCCTGTCAGAGTTTTGACAAAGATCTGCAT 111 >seq581596 Length=910 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| |||||||| || | ||| | | |||||| Sbjct 437 ACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAATCTGCAAGAGTTCTTCCATCCTCC 496 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 497 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTC 552 >seq476667 Length=529 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| ||||| || || | ||| | |||||||| Sbjct 285 ACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 226 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 225 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTC 170 >seq35568 Length=7068 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||||||||||||||| || || || | ||| | | ||||| Sbjct 3452 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAGCAAGTGTCCTTCCATCCTC 3511 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| |||| | |||||||| || ||| | ||||| ||||| Sbjct 3512 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTG 3571 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | || | ||| || ||| ||| | || ||||| Sbjct 3572 AATTTTAGCTTTCACATTATCAATGGT---GTCAGAGCTTTCCACTTCCAAAGTGATGGT 3628 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | || |||||||| |||||||| Sbjct 3629 TTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 3661 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| ||||| |||||||| || | || | | ||||| ||||| || || Sbjct 3237 GTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGCTTTCCA 3296 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || || ||||| ||| ||| | |||||| ||||| ||| || ||| Sbjct 3297 GCGAATATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTAGCTTTC 3356 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | ||| || | || ||||| || ||||| |||||| Sbjct 3357 ACATTGTCAATTGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTTCCTGTCAAAGTT 3416 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| |||||||| Sbjct 3417 TTGACAAAGATTTGCAT 3433 >seq25161 Length=2200 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||| | |||||||||||||| ||||||||||| | Sbjct 789 TTCCACCACGCAGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGG 730 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| |||||||| || ||| | || || ||||||||||| || Sbjct 729 CAAGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGG 670 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||| ||||| || || || || | ||| ||||| | ||| Sbjct 669 GTATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAA 610 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || ||||| | ||| || ||||| || ||||| Sbjct 609 CCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCAT 561 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| ||||| || || | ||| | |||||||| Sbjct 997 ACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCC 938 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| ||| | || || ||||||||||| ||| | ||||| ||||| Sbjct 937 AACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTC 882 >seq592805 Length=13616 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || ||||||||||| |||| || || ||||||| Sbjct 499 CACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCCAGGGTCCTGCCGTCCTC 440 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 || ||| ||||| ||| | || | ||||||||||||| ||| | ||||| || || Sbjct 439 CAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGGGGAATTCCCTCCTTATC 383 >seq54869 Length=20101 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| ||||| |||||||| || | || | | ||||| ||||| || || Sbjct 4825 GTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCGAGCTGCTTTCCA 4766 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || || ||||| ||| ||| | |||||| ||||| ||| || ||| Sbjct 4765 GCGAATATGAGCCTTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTAGCTTTC 4706 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||| | ||| || | || ||||| || ||||| |||||| Sbjct 4705 ACATTGTCAATTGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTTCCTGTCAAAGTT 4646 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| |||||||| Sbjct 4645 TTGACAAAGATTTGCAT 4629 >seq32509 Length=4583 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||||||||||||||| || || || | ||| | | ||||| Sbjct 1455 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCCATCCTC 1514 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| ||||| ||| |||| | |||||||| || ||| | ||||| || || Sbjct 1515 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 1574 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGT 19008 |||||| ||| || | | | || | ||| || ||| ||| | || ||||| Sbjct 1575 AATTTTAGCTTTCACATTATCTATGGT---GTCAGAGCTTTCCACTTCCAAAGTGATGGT 1631 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || || | || |||||||| |||||||| Sbjct 1632 TTTGCCAGTAAGGGTCTTGACAAAGATTTGCAT 1664 >seq610020 Length=13068 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | |||||| ||||| | ||| | || ||||| ||||| ||||| ||||| | Sbjct 6297 TTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTG 6356 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | | ||| | || |||| ||| ||||| ||| |||| |||||||||||||| Sbjct 6357 CAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATC 6411 >seq418407 Length=782 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||||||||| |||||||| |||| || | | | ||||| ||||| || || Sbjct 685 GTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGTGGCCATCCTCAAGCTGCTTCCCA 626 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || ||||||||||| || || | |||||||| || ||| || || Sbjct 625 GCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGAATCTTTGCCTTC 566 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | || || | ||| || | ||| |||||||| || || | ||| Sbjct 565 ACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTC 506 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| |||||||| Sbjct 505 TTCACAAAGATTTGCAT 489 >seq429140 Length=2933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| | | ||||| ||| | ||||| |||||||| ||||||||||| | Sbjct 39 TTCCACCACGCAGACGGAGCACCAGGTGAAGAGTAGATTCCTTTTGGATATTGTAATCAG 98 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| ||||| || || ||| | || || ||||||||||| || Sbjct 99 CAAGGGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAATATGAGCCTCTGCTGATCTGGGG 158 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||| ||||| || || || || | ||| ||||| | ||| Sbjct 159 GGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATCGTATCAGAACTCTCAA 218 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || ||||| | ||| || ||||| || ||||| Sbjct 219 CCTCTAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAATATCTGCAT 267 >seq36855 Length=2596 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||||| || || ||||||||||| ||||| || || | ||| | | |||||| Sbjct 23 ACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCATCCTCC 82 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 | ||||||||| | | | || || ||||||||||| ||| | ||||| ||||| Sbjct 83 AACTGTTTACCTGTAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTC 138 >seq212778 Length=353 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| |||| || | |||| |||||| || || ||||||||||| |||||||| Sbjct 62 TTCCTCCACGCAGCCGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAATCTT 121 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 | ||| | | ||||||| ||||| ||| ||| | || || ||||||||||| Sbjct 122 TAAGAGTTCTTCCATCCTCCAACTGTTCACCTGCAAAGATGAGCCTCTGCTGATC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411410040432604