Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq53130 91.5 9e-14 seq468900 84.2 1e-11 >seq53130 Length=9294 Score = 91.5 bits (100), Expect = 9e-14 Identities = 151/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG--TCA 33217 ||||||||||| |||||||| || || ||||||||||| || || | || || Sbjct 5232 CACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCGA--AAGGGTCCTGCCATCC 5289 Query 33218 TCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCG 33277 ||||||||||| ||| || || || | ||||| |||| || || ||||| || || Sbjct 5290 TCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCA 5349 Query 33278 CTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 |||| ||| || || | | |||||||||| | | ||| || ||||| ||| Sbjct 5350 TGAATCTTGGCC---TTGACGTTATCAATCGTGTCGGAGCTCTCAACTTCGAGAGTGATC 5406 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || ||||| || ||||| |||| ||| Sbjct 5407 GTCTTCCCGGTGAGAGTCTTCACGAAGATTTACAT 5441 >seq468900 Length=687 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/217 (70%), Gaps = 14/217 (6%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-GGTCAT 33218 ||||||||| | |||||||| || || ||||||||||||| ||| | ||| || ||| Sbjct 354 CACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAG-CAA---GGGTTCGGCCAT 299 Query 33219 CC---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 || | ||||| ||| ||| || | ||| |||||||||| ||| || || || || | Sbjct 298 CCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGT 239 Query 33276 CGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | |||| ||| || || | | ||| ||||| | | || || || || | Sbjct 238 CCTGAATCTTGGCC---TTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGA 182 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || || ||||| |||||||||||||| Sbjct 181 TAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 316345658241468