Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq213125 111 1e-19 seq518350 98.7 7e-16 seq513390 95.1 9e-15 seq592805 93.3 3e-14 seq35568 87.8 1e-12 seq32509 87.8 1e-12 seq54869 86.0 4e-12 >seq213125 Length=352 Score = 111 bits (122), Expect = 1e-19 Identities = 141/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || |||||||||||| || | || |||| ||||| || ||||| ||||| Sbjct 206 CTCTTTCTGGATATTATAATCGCCAAAGTT-CGACCATCCTCCAACTGCTTTCCGGCAAA 148 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| |||||| ||| | || | ||| || |||||| ||| || |||||| | Sbjct 147 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGCTTTGACATT 88 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 ||| ||||| | |||||| || | || || || || || || ||||||||||| Sbjct 87 GTCAATGGTATCAGAGCTCTCCACCTCCATAGTGATGGTCTTGCCAGTCAAAGTCTTCAC 28 Query 44110 AAATATTTGCATG 44122 ||| || |||||| Sbjct 27 AAAAATCTGCATG 15 >seq518350 Length=4758 Score = 98.7 bits (108), Expect = 7e-16 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || |||||||||||| || ||| |||| ||||| || ||||| || || Sbjct 3168 CTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 3109 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| |||||| ||| | || | ||| || |||||| ||| || ||||||| | Sbjct 3108 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGGTTTGACATT 3049 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT-TAAAGTCTTCA 44108 ||| ||||| | ||| || |||| || || || || | || |||||||||| Sbjct 3048 GTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCAAGTCAAAAGTCTTCA 2989 Query 44109 CAAATATTTGCATG 44122 |||| | |||||| Sbjct 2988 CAAAAACCTGCATG 2975 >seq513390 Length=1501 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 |||||| || |||||||||||| || ||| |||| |||| || ||||| || || Sbjct 215 CTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCACCTGCTTTCCGGCGAA 156 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| |||||| ||| | || | ||| || |||||| ||| || ||||||| | Sbjct 155 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGGTTTGACATT 96 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT-TAAAGTCTTCA 44108 ||| ||||| | ||| || |||| || || || || | || |||||||||| Sbjct 95 GTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCAAGTCAAAAGTCTTCA 36 Query 44109 CAAATATTTGCATG 44122 |||| | |||||| Sbjct 35 CAAAAACCTGCATG 22 >seq592805 Length=13616 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || ||| ||| || || ||||| ||||| | ||| |||| || Sbjct 954 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 895 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | || || |||||||| ||||||| ||||||||| | || | |||||| ||||| | Sbjct 894 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGA 835 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || |||||| || | | ||||| | |||||| || | || || || || Sbjct 834 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 775 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || |||||||||||||| || ||||| Sbjct 774 CCTGTCAAAGTCTTCACAAAGATCTGCAT 746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969 |||||| || || || ||| || || ||||| ||||| || ||| || |||| Sbjct 727 CACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAATCCGC-AAGAGAC-CTGCCATCC 670 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 |||||||| ||||| || || ||||||| ||||| ||| | || | ||||| ||||| Sbjct 669 TCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCC 610 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || ||||| || ||| ||||| | ||| || || | ||||| || Sbjct 609 TGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGTAATGGTC 550 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || |||||||||||||| || ||||| Sbjct 549 TTCCCTGTCAAAGTCTTCACAAAAATCTGCAT 518 >seq35568 Length=7068 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970 |||||| || || ||| ||| |||||||||||||| || || || | | |||| | Sbjct 3452 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-AGCAAGTGTCCTTCCATCCT 3510 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | || || |||||||| ||||||| |||||||| | || | ||| || || || Sbjct 3511 CAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCT 3570 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 |||||| ||| || || ||| || || | ||||| || | || || |||| Sbjct 3571 GAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTT 3630 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | ||||| | ||||| ||||| ||||||||| Sbjct 3631 TGCCGGTAAGGGTCTTGACAAAGATTTGCATG 3662 >seq32509 Length=4583 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970 |||||| || || ||| ||| |||||||||||||| || | || || | | |||| | Sbjct 1455 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCT 1513 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | || || |||||||| ||||||| |||||||| | || | ||| || ||||| Sbjct 1514 CAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCT 1573 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 |||||| ||| || || | | || || | ||||| || | || || |||| Sbjct 1574 GAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTT 1633 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || || | ||||| ||||| ||||||||| Sbjct 1634 TGCCAGTAAGGGTCTTGACAAAGATTTGCATG 1665 >seq54869 Length=20101 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGTCCAATTGTTTTCCTGCAA 43988 ||| |||||||||||||| || | || || | | |||| || | || || ||||||| Sbjct 4506 CTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAA 4448 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | ||||||| |||||||| | || | ||| || ||||| |||||| ||| || Sbjct 4447 AAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATTTTAGCTTTCACAT 4388 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || ||| || || | ||||| || | || || ||||| ||||| | ||||| | Sbjct 4387 TATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGA 4328 Query 44109 CAAATATTTGCATG 44122 |||| ||||||||| Sbjct 4327 CAAAGATTTGCATG 4314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 352071015658968