Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06]
625,966 sequences; 697,762,269 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq213125 111 1e-19
seq518350 98.7 7e-16
seq513390 95.1 9e-15
seq592805 93.3 3e-14
seq35568 87.8 1e-12
seq32509 87.8 1e-12
seq54869 86.0 4e-12
>seq213125
Length=352
Score = 111 bits (122), Expect = 1e-19
Identities = 141/193 (73%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| || |||||||||||| || | || |||| ||||| || ||||| |||||
Sbjct 206 CTCTTTCTGGATATTATAATCGCCAAAGTT-CGACCATCCTCCAACTGCTTTCCGGCAAA 148
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
||||||| |||||| ||| | || | ||| || |||||| ||| || |||||| |
Sbjct 147 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGCTTTGACATT 88
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
||| ||||| | |||||| || | || || || || || || |||||||||||
Sbjct 87 GTCAATGGTATCAGAGCTCTCCACCTCCATAGTGATGGTCTTGCCAGTCAAAGTCTTCAC 28
Query 44110 AAATATTTGCATG 44122
||| || ||||||
Sbjct 27 AAAAATCTGCATG 15
>seq518350
Length=4758
Score = 98.7 bits (108), Expect = 7e-16
Identities = 139/194 (72%), Gaps = 1/194 (1%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| || |||||||||||| || ||| |||| ||||| || ||||| || ||
Sbjct 3168 CTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 3109
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
||||||| |||||| ||| | || | ||| || |||||| ||| || ||||||| |
Sbjct 3108 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGGTTTGACATT 3049
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT-TAAAGTCTTCA 44108
||| ||||| | ||| || |||| || || || || | || ||||||||||
Sbjct 3048 GTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCAAGTCAAAAGTCTTCA 2989
Query 44109 CAAATATTTGCATG 44122
|||| | ||||||
Sbjct 2988 CAAAAACCTGCATG 2975
>seq513390
Length=1501
Score = 95.1 bits (104), Expect = 9e-15
Identities = 138/194 (71%), Gaps = 1/194 (1%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
|||||| || |||||||||||| || ||| |||| |||| || ||||| || ||
Sbjct 215 CTCTTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCACCTGCTTTCCGGCGAA 156
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
||||||| |||||| ||| | || | ||| || |||||| ||| || ||||||| |
Sbjct 155 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAATCTTGGGTTTGACATT 96
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT-TAAAGTCTTCA 44108
||| ||||| | ||| || |||| || || || || | || ||||||||||
Sbjct 95 GTCAATGGTATCAGAGCTCTCTACCTCGAGGGTGATGGTCTTGCAAGTCAAAAGTCTTCA 36
Query 44109 CAAATATTTGCATG 44122
|||| | ||||||
Sbjct 35 CAAAAACCTGCATG 22
>seq592805
Length=13616
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
||||| || || ||| ||| || || ||||| ||||| | ||| |||| ||
Sbjct 954 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 895
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
| || || |||||||| ||||||| ||||||||| | || | |||||| ||||| |
Sbjct 894 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGA 835
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || |||||| || | | ||||| | |||||| || | || || || ||
Sbjct 834 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 775
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || |||||||||||||| || |||||
Sbjct 774 CCTGTCAAAGTCTTCACAAAGATCTGCAT 746
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969
|||||| || || || ||| || || ||||| ||||| || ||| || ||||
Sbjct 727 CACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAATCCGC-AAGAGAC-CTGCCATCC 670
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
|||||||| ||||| || || ||||||| ||||| ||| | || | ||||| |||||
Sbjct 669 TCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCC 610
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
|| || ||||| || ||| ||||| | ||| || || | ||||| ||
Sbjct 609 TGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGTAATGGTC 550
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || |||||||||||||| || |||||
Sbjct 549 TTCCCTGTCAAAGTCTTCACAAAAATCTGCAT 518
>seq35568
Length=7068
Score = 87.8 bits (96), Expect = 1e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970
|||||| || || ||| ||| |||||||||||||| || || || | | |||| |
Sbjct 3452 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-AGCAAGTGTCCTTCCATCCT 3510
Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030
| | || || |||||||| ||||||| |||||||| | || | ||| || || ||
Sbjct 3511 CAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCCT 3570
Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090
|||||| ||| || || ||| || || | ||||| || | || || ||||
Sbjct 3571 GAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTT 3630
Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
| ||||| | ||||| ||||| |||||||||
Sbjct 3631 TGCCGGTAAGGGTCTTGACAAAGATTTGCATG 3662
>seq32509
Length=4583
Score = 87.8 bits (96), Expect = 1e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970
|||||| || || ||| ||| |||||||||||||| || | || || | | |||| |
Sbjct 1455 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCT 1513
Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030
| | || || |||||||| ||||||| |||||||| | || | ||| || |||||
Sbjct 1514 CAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCT 1573
Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090
|||||| ||| || || | | || || | ||||| || | || || ||||
Sbjct 1574 GAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTT 1633
Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
| || || | ||||| ||||| |||||||||
Sbjct 1634 TGCCAGTAAGGGTCTTGACAAAGATTTGCATG 1665
>seq54869
Length=20101
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/194 (71%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGTCCAATTGTTTTCCTGCAA 43988
||| |||||||||||||| || | || || | | |||| || | || || |||||||
Sbjct 4506 CTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAA 4448
Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048
| ||||||| |||||||| | || | ||| || ||||| |||||| ||| ||
Sbjct 4447 AAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTGAATTTTAGCTTTCACAT 4388
Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108
|| ||| || || | ||||| || | || || ||||| ||||| | ||||| |
Sbjct 4387 TATCAATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGA 4328
Query 44109 CAAATATTTGCATG 44122
|||| |||||||||
Sbjct 4327 CAAAGATTTGCATG 4314
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 352071015658968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |