Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq592805 102 7e-17 seq418407 96.9 3e-15 seq62158 95.1 1e-14 seq468900 93.3 4e-14 seq492976 91.5 1e-13 seq54597 91.5 1e-13 seq488379 87.8 2e-12 seq597173 82.4 6e-11 >seq592805 Length=13616 Score = 102 bits (112), Expect = 7e-17 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | | | ||| ||||| || || |||||| ||||||||||||||||| Sbjct 289 ACCACCGCGAAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGC 230 Query 48559 CAATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACC 48616 ||| ||| || ||||||| |||||||| ||| || | || || | |||||||||| Sbjct 229 CAA-GGTC-CTACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCCGGG 172 Query 48617 GGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTC 48675 || | | |||||||||| || || |||| | | | |||||||| | ||| Sbjct 171 GGGATCCCTTCCTTGTCCTGGATCTT-AGCTTTCACGTTGTCGATGGTATCAGAGCTCTC 113 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || ||||| || |||||||| || |||||||| Sbjct 112 GACCTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 62 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || || ||||||||||||| || | ||||| Sbjct 954 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 895 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || | | || || | |||||| ||| || | || |||||| ||| | Sbjct 894 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGA 835 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || |||| | | |||||||| | | |||| ||| | || ||||| || Sbjct 834 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 775 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | ||| |||||||| ||||||||| Sbjct 774 CCTGTCAAAGTCTTCACAAAGATCTGCATC 745 >seq418407 Length=782 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 ||||||||||| ||| |||||||||||||||||||||||||| ||| || | ||||| Sbjct 697 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGTGGC-CATCCTC 639 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | | |||||| || || | || || || ||| Sbjct 638 AAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTG 579 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | ||||| || | | ||| ||| | ||||||||||| Sbjct 578 AATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTT 519 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| |||||||| || ||||| Sbjct 518 CCCAGTGAGAGTCTTCACAAAGATTTGCAT 489 >seq62158 Length=5977 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || ||||| || ||||||| |||||||| ||| || | Sbjct 747 CCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 806 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | | ||||||||| || || ||||| | Sbjct 807 ATGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 866 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| ||| | |||| ||||| || ||||| || || || || |||||||| Sbjct 867 TCGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACG 926 Query 48716 AAAATCTGCATC 48727 |||||||||||| Sbjct 927 AAAATCTGCATC 938 >seq468900 Length=687 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| ||||| || || |||||| || || ||||||||||| Sbjct 372 ACCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAATCAGC 313 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | ||| | ||||| |||||||| || | | || | ||||||||| ||| || Sbjct 312 AAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 253 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| || ||| | | ||||| || | ||||||| Sbjct 252 AATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCAC 193 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || || || |||||||| |||||||| ||||| |||||| Sbjct 192 CTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCACGAAAATTTGCATC 144 >seq492976 Length=9861 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| ||||||||||||||||||| || ||||||| Sbjct 8156 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 8215 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| | | || || | ||||| ||| || | | |||||| ||| Sbjct 8216 AGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATCCCTTCCTTATCCTGG 8275 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || |||| | | |||||||| | ||| ||| | || ||||| || Sbjct 8276 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 8335 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | ||| |||||||||||||||||| Sbjct 8336 CCTGTCAAAGTCTTCACAAAAATCTGCATC 8365 >seq54597 Length=20763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || ||||| || ||||||| |||||||| ||| || | Sbjct 12912 CCTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 12971 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | | ||||||||| || || ||||| | Sbjct 12972 ATGAGACGCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTG 13031 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| ||| | |||| ||||| || ||||| || || || || |||||||| Sbjct 13032 TCGATGGTGTCGCTGCTCTCCACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACG 13091 Query 48716 AAAATCTGCATC 48727 || ||||||||| Sbjct 13092 AATATCTGCATC 13103 >seq488379 Length=457 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||| | ||| || || || ||| |||||| || || |||||||| || Sbjct 5 CCACCACGAAGCCTGAGCACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGC- 63 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || ||||||||| |||||||||| | | || || | |||||||||| | Sbjct 64 AAGAGTC-CTGCCGTCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCCGGTG 122 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||| ||| || || ||||| | || ||||||| ||| Sbjct 123 GGATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAA 182 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || | ||| ||||||||||||||||| Sbjct 183 CCTCCAGGGTAATGGTCTTCCCTGTCAAAGTCTTCACAAAAATCTGCAT 231 >seq597173 Length=998 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||||||||| | ||| | ||||| |||||||| || | | Sbjct 3 CTCCTTCTGGATATTGTAATCAGCTAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAA 62 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| || || | | ||||||||| ||| || ||| | Sbjct 63 GATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTAACGTT 122 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | ||||||| ||| | || || || || |||||||| |||||||| Sbjct 123 GTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTTTTCAC 182 Query 48715 AAAAATCTGCATC 48727 ||||| |||||| Sbjct 183 GAAAATTTGCATC 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418037491181966