Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20x_20ananassa_20[genbank_20GCA_5F000511835.1_202013-12-06] 625,966 sequences; 697,762,269 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq32757 259 6e-64 seq39735 239 6e-58 seq455362 114 2e-20 >seq32757 Length=9777 Score = 259 bits (286), Expect = 6e-64 Identities = 256/329 (78%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 |||||| |||||||||| ||||||||||| || |||||||| || || || ||||||||| Sbjct 3701 TTTATTATTGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 3760 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCT--AGCA 135584 |||| ||| || | |||||||| || || || || ||||| |||||||| || ||| Sbjct 3761 TCTGGATCTTTACTTTACGGAAACAATATTATTTCCGGTGCCATTATCCCTACTTCTGCA 3820 Query 135585 ACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTAT 135644 || || || | ||||| || || || |||||||| |||||| ||||||| ||| ||| Sbjct 3821 --GCTATAGGTTTGCACTTTTACCCAATATGGGAAGCGGCTTCTGTTGATGAATGGTTAT 3878 Query 135645 ATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACA 135704 | || ||||| |||||| | ||| | || | |||||| | | ||||| | || | Sbjct 3879 ACAACGGTGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTATA 3938 Query 135705 TGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTT 135764 ||||||| ||||||||||| || ||| ||||||||||||||||||||| ||| || | Sbjct 3939 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 3998 Query 135765 ACTCAGCCCCTGTTGCCGCTGCTACTGCT 135793 | ||||| |||||||| |||||||||||| Sbjct 3999 ATTCAGCTCCTGTTGCAGCTGCTACTGCT 4027 >seq39735 Length=4112 Score = 239 bits (264), Expect = 6e-58 Identities = 260/345 (75%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 135764 TACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGT 135823 || ||||| |||||||| |||||||||||| ||||| || ||||||| |||| ||||| Sbjct 1640 TATTCAGCTCCTGTTGCAGCTGCTACTGCTATTTTCTTGATCTACCCAATTGGTCAAGGA 1699 Query 135824 TCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTC 135883 || ||| |||||||| || || || ||||| ||||| |||| |||| |||| ||| Sbjct 1700 AGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTC 1759 Query 135884 CAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTC 135943 || || || |||||||| || ||||| || || |||||| | || || ||||| || || Sbjct 1760 CAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGCTAGGTGTGGCTGGTGTATTT 1819 Query 135944 GGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAG 136003 || ||||| || ||| |||||||||||| ||| | || ||||||||| | | | || Sbjct 1820 GGCGGTTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAA 1879 Query 136004 ACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACTTAC 136063 || || || ||||| || | ||||||| ||||||||||| ||||| || || Sbjct 1880 ACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTAT 1939 Query 136064 AACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAA 136108 || || || || ||||||||||| || || || ||||||||||| Sbjct 1940 AATATCGTAGCCGCTCATGGTTAGTTTGGCCGATTGATCTTCCAA 1984 >seq455362 Length=6327 Score = 114 bits (126), Expect = 2e-20 Identities = 117/150 (78%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 135432 TGATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCA 135490 ||||||| |||||| | | | || || |||| |||||| |||||||||| |||||| Sbjct 842 TGATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATTGCTTTCATTGCTGCA 784 Query 135491 CCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAAT 135550 ||||| || |||||||| || || || ||||||||| |||| ||| || | |||||||| Sbjct 783 CCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTTTACTTTACGGAAAC 724 Query 135551 AACATCATCTCTGGTGCTGTTATCCCTTCT 135580 || || || || ||||| |||||||| || Sbjct 723 AATATTATTTCCGGTGCCATTATCCCTACT 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623054417286400